Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05576 ATGGAAGAAACATTTGTACCCTTTGAGGGGATCAAGAATGACCTCAGAGGAAGGTTAATGTGCTACAAACAAGATTGGACAGGCGGAATCAGAGCAGGATTAAGGATTTTGGCCCCCACCACATACATATTCTTTGCTTCCGCAATACCTGTCATATCATTTGGTGAACAGCTAGAGAGAAATACTGGTACTGAATATTCTAACTTCAGTAGATTCATCTTTTTCATGAGAATAAGAAAAGTTATTAAAAGTTATATTGCAGATGGTGTTCTAACAGCTGTTCAAACCTTGGTATCCACTTCAATATGTGGCATCATACACTCAATCATTGGTGGTCAACCTTTATTGATTTTAGGAGTGGCAGAGCCTACAGTGATCATGTACACATTCATGTTCAATTTTGCAAAAGAGAGACCAGAGTTGGGAAGGGACCTGTTTCTGGCATGGACTGGATGGGTATGTGTATGGACTGCACTGTTGCTATTCTTATTGGCCATCTTAGGGGCTTGCTCCATCATCAACAGGTTTACCCGTATTGCAGGAGAATTGTTTGGCCTGCTTATTGCAATGCTTTTCATGCAGCAAGCTATCAAGGGACTTGTGGATGAATTTCGCATACCTGGGAGAGAAAATCCAAAAGCAGTTGAATTTACAACTCCATGGAGGTTTGCCAATGGGATGTTTGCTTTAGTCCTTTCATTTGGCCTTCTCCTCACTGCATTAAGAAGCAGAAAGGCTAGGTCATGGCGTTATGGTAGTGGTTGGATTCGCAGCCTCATAGCTGACTATGGTGTTCCCCTTATGGTCCTAGTTTGGACAGGTGTATCCTACATACCATCTGGAAATGTTCCACATGGTATCCCAAGGCGCCTTTTTAGCCCAAATCCATGGTCACCTGGTGCATATGAGAATTGGACAGTTATTAAGGATATGGTCCATGTTCCTATTGTCTACATAATTGGAGCATTTATCCCAGCAACCATGATTGCAGTGCTTTATTACTTTGACCACAGTGTGGCATCCCAGCTTTCCCAGCAGAAAGAGTTCAATTTGAGAAAGCCATCTTCTTACCACTATGACTTGCTCCTTTTGGGATTTTTGACCTTAATGTGTGGCCTTATTGGAATTCCTCCTTCAAATGGAGTCATACCACAATCTCCAATGCACACAAAGAGTTTGGCAACTCTTAAACATCAGTTGCTTCGTAACAGACTGATGATAACTGCTCGAAAAAGTATTAGTAAGAATGCCAGTTTAGGACAGTTATATGGAAATATGCAAGAAGTCTACCATCAAATGCAGACACCTCTTATTTACCAGGACCCCTCTGGACTAAAAGAATTAAAAGAATCAACCATTCAAGCAGCTACCAGCATGGGAAACATGAACGCTCCCATAGATGAGAGTCTCTTTGATATTGAGAAAGAAATAGATGACCTGCTTCCTGTTGAGGTAAAGGAACAACGTCTCAGTAACTTGCTTCAAGCAGTAATGGTAGGAGGATGCGTTGCAGCCATGCCTGTCCTCAAGAAGATCCCAACCTCAGTCCTTTGGGGCTACTTTGCCTTCATGGCCATTGAAAGTTTGCCAGGAAACCAGTTTTGGGAAAGGATCCTATTACTCTTCACTGCACCAAGCAGGAGATATAAGGTGCTTGAGGATTACCATGCTACTTTTGTGGAAACAGTTCCTTTCAAGACAATAGCAACATTCACCATTTTCCAAACCATTTATCTTCTTATATGTTTTGGACTAACTTGGGTCCCTATTGCTGGGGTCATGTTTCCTTTGATGATCATGCTCTTAGTTCCATTAAGACAGTACTTTCTCCCCAAATTTTTTAAAGGGGCACATCTTCAAGACTTGGATGCAGCAGAGTATGAAGAGCAAACTGCTTTACCATACAACCTTGCAACACAATCTGAATTTGGAGCTGGTGCTTCTCATGCTGGAGAAGGTGAGATCCTAGATGAAGTTATCACTAGAAGCCGTGGTGAGTTTAGGCACACTAGCTGTAGTCCAAGGATCACAAGCTCCACTCCAACACCAGGAAATGATCCTAAGAGCCATCTAAGCCCACGTCTCTCTTTTAGTTCTCGCGCGGGTGAGCTCACCACTGAGCAAAGTCCTCGCTCTGGTGCAAGAGGTCACTATAGTCCAAAGGCCAGAGAAGTGAAATTATCAAATCTGGGAAGAAGTCCTCTTAACCCTGATTCAAAACAGCAGGACAACAAATAA 2238 0.4258 MEETFVPFEGIKNDLRGRLMCYKQDWTGGIRAGLRILAPTTYIFFASAIPVISFGEQLERNTGTEYSNFSRFIFFMRIRKVIKSYIADGVLTAVQTLVSTSICGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRDLFLAWTGWVCVWTALLLFLLAILGACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVDEFRIPGRENPKAVEFTTPWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWIRSLIADYGVPLMVLVWTGVSYIPSGNVPHGIPRRLFSPNPWSPGAYENWTVIKDMVHVPIVYIIGAFIPATMIAVLYYFDHSVASQLSQQKEFNLRKPSSYHYDLLLLGFLTLMCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNRLMITARKSISKNASLGQLYGNMQEVYHQMQTPLIYQDPSGLKELKESTIQAATSMGNMNAPIDESLFDIEKEIDDLLPVEVKEQRLSNLLQAVMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKTIATFTIFQTIYLLICFGLTWVPIAGVMFPLMIMLLVPLRQYFLPKFFKGAHLQDLDAAEYEEQTALPYNLATQSEFGAGASHAGEGEILDEVITRSRGEFRHTSCSPRITSSTPTPGNDPKSHLSPRLSFSSRAGELTTEQSPRSGARGHYSPKAREVKLSNLGRSPLNPDSKQQDNK. 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05576 745 MobiDBLite consensus disorder prediction 670 713 - -
Seca1g05576 745 Pfam HCO3- transporter family 226 398 IPR011531 GO:0006820|GO:0016020
Seca1g05576 745 Pfam HCO3- transporter family 483 573 IPR011531 GO:0006820|GO:0016020
Seca1g05576 745 Pfam HCO3- transporter family 7 205 IPR011531 GO:0006820|GO:0016020
Seca1g05576 745 FunFam probable boron transporter 2 18 60 - -
Seca1g05576 745 MobiDBLite consensus disorder prediction 666 745 - -
Seca1g05576 745 PANTHER ANION EXCHANGE PROTEIN 2 631 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca1g05576 745 Gene3D Helical hairpin bin 18 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05576 Seca-Chr1 159443536 159447958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05576 1 741 Antiporters AT2G47160 79.650 0.0 1179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05576 K24194 - gmx:100776705 1303.12