Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05569 ATGATGAGAAGTTTATCAGGAGCATATGGAAGTAGAAGTGGAAGTGAAGAAGAGATGGAAATAACGAAAGGTCCATGGACAGAGGAGGAGGATTCTGTTCTCTTCAACTACATCACTGTCCACGGCGAAGGTCACTGGAATACTGTCGCTCGTTCTGCAGGTCTTAAGCGAACAGGGAAAAGCTGCAGGTTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGCAACATAACCCTTCAAGAACAGCTCTTGATTCTTGACCTCCATTCCCGCTGGGGCAATCGGTGGTCCAAAATAGCTCAACACTTACCGGGAAGAACAGATAACGAGATTAAAAATTATTGGAGGACGAGAGTGGTGAAGCAGGCTAAGCAACTCAAATGTGATGTTAACAGCAAACAGTTCAGAGACACTCTGCGTTTTGTATGGATGCCACGTATGCTAGAAAGGATCCAGGCTGAGGCCTCATCAGGGGATGGGACTCCTTGCCATGACCAACAACAACAACCCAACTTGTCCAACACTCAACAGCACAGTTTGTTATCAGAGGCCTCATCATCTGCCGTTGATGTCCATCAGGCTCCTTCTCTCTCTGCAGACTCTAGTGCATCTAATTACAGTTTAATGGATGGTGGTAGTGGTAATACTAGCTGCTCATCATATAGTGCAGAGAGAAACTACATGTACATGGACATAACAGGCAACTATTTCGGTGGTGCTGACTTATGGACGGATGAAAACATATGCTTCTTGCAACAGCAGCTAGCTGATGACATCTAG 786 0.4567 MMRSLSGAYGSRSGSEEEMEITKGPWTEEEDSVLFNYITVHGEGHWNTVARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAEASSGDGTPCHDQQQQPNLSNTQQHSLLSEASSSAVDVHQAPSLSADSSASNYSLMDGGSGNTSCSSYSAERNYMYMDITGNYFGGADLWTDENICFLQQQLADDI. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05569 261 Gene3D - 22 75 - -
Seca1g05569 261 SMART sant 75 123 IPR001005 -
Seca1g05569 261 SMART sant 22 72 IPR001005 -
Seca1g05569 261 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Seca1g05569 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Seca1g05569 261 Gene3D - 80 121 - -
Seca1g05569 261 FunFam MYB transcription factor 80 143 - -
Seca1g05569 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Seca1g05569 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 200 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca1g05569 261 MobiDBLite consensus disorder prediction 161 215 - -
Seca1g05569 261 FunFam Myb transcription factor 23 75 - -
Seca1g05569 261 CDD SANT 80 119 IPR001005 -
Seca1g05569 261 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Seca1g05569 261 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Seca1g05569 261 MobiDBLite consensus disorder prediction 156 215 - -
Seca1g05569 261 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Seca1g05569 261 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Seca1g05569 261 MobiDBLite consensus disorder prediction 1 23 - -
Seca1g05569 261 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05569 Seca-Chr1 159353643 159354733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05569 16 260 MYB Transcription Factor Family AT2G47190 51.953 1.06e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g05569 Myb_DNA-binding 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05569 K09422 - gmx:100819467 377.481