Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05566 ATGTGGACCAAGGAGGAGACAGATAAACTATTTGACTTGTGTGAGAGGTTTGATCTCCGATTTATTGTAATAGCTGATAGGTTCCCGTCATCTCGGACTGTAGAGGAATTAAAGGATCGATATTATAGTGTATCGCGGGCTATATTAATTTCTAGGGCTCCGTCGCCTGGGGATGTTGCGGCAAATCCTCTTGTTAAGGAACCATATAATGTTTCACAAGAAATGGAGCGGAAACGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAGCGAAAAGATGAAGAGGTTCTCATTGAAGCAAAAAGAATAGCTGAGTTACGCATGCCTTCTAAGGCTGCGGAAGAGACTCAGTTACCTGTTGCTTCAAATGCTGGTGCAGAAGTTTCAGAGAGGGCTGTCCCTGGTGAAACTGTATCTCCAATGAATGTGCAACTTCCATCAATGGTTGTTCCAGATAATGCATCTACTCTCGCTTCTCTTCGCATTCTTCGTGTATATTCGAGAACATATGCACTTGAGCAAATGGTGCAAGCGGCAAACTCATCTGCTGGACTTCGGACTATCAAACGGGTTGAGCAAACTTTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCAACGAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAAAGAAATACTAACTTGGCTGAATCTCCAGAAACAGGTCCAATATAAAGAGGCTGAAGGTTCATCTTTTCGTGATGGGTCATATGGTGAAACACCAGGCACACCAAAGCATTTGCATCGTGGTGGGGATCAGGATCGGACATTTATTCCAGAATCCATGAATTTTGGAGGGGAAAGGGTTGGCAAAAAGGACCACAAGCGCAAGGGACCTGGAGCTCCAGCACCATCAGGTCATAAAAGACCTAGAAAACAAAAAGCCTCAGATCTTTAG 933 0.4437 MWTKEETDKLFDLCERFDLRFIVIADRFPSSRTVEELKDRYYSVSRAILISRAPSPGDVAANPLVKEPYNVSQEMERKRALSMVLSQTRQQERKDEEVLIEAKRIAELRMPSKAAEETQLPVASNAGAEVSERAVPGETVSPMNVQLPSMVVPDNASTLASLRILRVYSRTYALEQMVQAANSSAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKHLHRGGDQDRTFIPESMNFGGERVGKKDHKRKGPGAPAPSGHKRPRKQKASDL. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05566 310 MobiDBLite consensus disorder prediction 239 310 - -
Seca1g05566 310 Pfam SANT/Myb-like domain of DAMP1 2 48 IPR032563 -
Seca1g05566 310 MobiDBLite consensus disorder prediction 278 292 - -
Seca1g05566 310 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 299 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Seca1g05566 310 CDD SANT_DMAP1_like 2 44 - -
Seca1g05566 310 Gene3D - 1 56 - -
Seca1g05566 310 SMART sant 2 47 IPR001005 -
Seca1g05566 310 SUPERFAMILY Homeodomain-like 1 50 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05566 Seca-Chr1 159308648 159312970 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca1g05566 SANT_DAMP1_like 9.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05566 K11324 - gmx:100818926 528.094