Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05562 ATGTCATTGAAAAGCATAGTTCGTGAACTTAAGGAGATGAGAGATGGAATAGGTAGCATATCAAAGCGAGGTGTAGAAAGCAGGCATTGGCTGGGTAGGACAAAGTCACACGTTGCTCCTGATGTCCTTGTAACTCCATTTGAACCTATTCAACAGGGACAGTGGGCAAATTTACCACCAGAATTGCTTTTGGACATAATTCGGAGAGTTGAAGAGAGTGAGACTTCTTGGCCTGCGAGGGCTGTTGTTGTTTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCATTGCAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACTTTTCCTATTTCGTTGAAGCAGTCGGGTCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATATATTGTACTTTGGTCTGGCGCCATATTTGAGAAGCTTGTTTTGTTTTGGTTTTGATTGTACAGCAGAGAATGAGAGTAATAAGTTGTTATTAGCTGCCAAAAGGACAAGAAGGGCAACAGGCACCAACTTTATCATATCCTTGGCTGCAAATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGTCTAACTTTTTGGGTACCAAGTTCACTATACACGACAGTCAACCTCCACGTGATGCTACTATTCAACCAAATTGTCCATCGAGTAGGAGATTTAATTCTAAGCAGGTGTCACCAAGAGTTCCAGCATGTAACTATCTTGTTGGCACCGTTTCCTATGAGCTGAATGTTCTCTGCACTAGAGGGCCTAGAAAAATGCACTGCATCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGAGGCAATGCCCCAACTTCACAATCTTCCCCTCAGATATTCGATGAACCTTTTTCTCCCTCACCAGCACTAAAAGGCAAAGGTACAACTACAGATTTAAACTCTGCAAGCCCACCAGAACTAGCAGTATTGAGCCAAGGCTCAGTTGAGCCTTTGGTACTAAAAAACAAGGCTCCCAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACTGTTATCCACTCTCTGCCTTTCAAGCCTTTGCCATCTGCTTGAGCAGCTTTGATACTAAACCAGCCTGTGAATGA 1284 0.4283 MSLKSIVRELKEMRDGIGSISKRGVESRHWLGRTKSHVAPDVLVTPFEPIQQGQWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSIAKEIVKTPEQCGRITFPISLKQSGPRDSPIQCFIRRNRETSTYILYFGLAPYLRSLFCFGFDCTAENESNKLLLAAKRTRRATGTNFIISLAANDFSRASNKYVGKLRSNFLGTKFTIHDSQPPRDATIQPNCPSSRRFNSKQVSPRVPACNYLVGTVSYELNVLCTRGPRKMHCIMNSIPVSAIQEGGNAPTSQSSPQIFDEPFSPSPALKGKGTTTDLNSASPPELAVLSQGSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQERVILQFGKIGKDIFTMDYCYPLSAFQAFAICLSSFDTKPACE. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05562 427 Gene3D - 48 101 - -
Seca1g05562 427 CDD F-box_AtTLP-like 55 99 - -
Seca1g05562 427 MobiDBLite consensus disorder prediction 283 320 - -
Seca1g05562 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Seca1g05562 427 PRINTS Tubby superfamily signature 199 223 IPR000007 -
Seca1g05562 427 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Seca1g05562 427 PRINTS Tubby superfamily signature 183 199 IPR000007 -
Seca1g05562 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Seca1g05562 427 PRINTS Tubby superfamily signature 248 275 IPR000007 -
Seca1g05562 427 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Seca1g05562 427 Pfam Tub family 116 422 IPR000007 -
Seca1g05562 427 SUPERFAMILY Tubby C-terminal domain-like 104 427 IPR025659 -
Seca1g05562 427 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Seca1g05562 427 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
Seca1g05562 427 Pfam F-box domain 55 102 IPR001810 GO:0005515
Seca1g05562 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Seca1g05562 427 MobiDBLite consensus disorder prediction 283 299 - -
Seca1g05562 427 Gene3D Tubby Protein; Chain A 115 421 IPR025659 -
Seca1g05562 427 PANTHER TUBBY-RELATED 49 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05562 Seca-Chr1 159296096 159298851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05562 1 427 TUB Transcription Factor Family AT2G18280 62.383 2.80e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca1g05562 Tub 6.8e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05562 K19600 - gmx:100805380 727.243