Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05555 ATGGAGGAACCGATTAATGGATCTTCATTGTTCCCTGGTGGTTATCCATTCCAGTTTGATTTTTCTGAAGAAAAGAACAGTACTTTAGGGTTCATGGAGTTACTGGGTGTGCAGGACTGCACTAGTCCTCTGCTTGATTCACCTCATCTCAAAGAGTCTGAGGTCTTGAACCACCAACCTCCCACTCCTAACTCTTCTTCCATTTCATCTGCATCAAGTGATGAGTTACACAATCATAACAAAACTGTTGACAAGCAACCGCCAAAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAAGCTAGATTCGCCTTCATGACGAAAAGCGAGGTCGATCATCTCGAAGATGGCTATAGATGGAGAAAGTACGGTCAAAAAGCTGTCAAAAATAGCCCCTTCCCCAGGAGCTATTATCGTTGCACCAGTGCTTCATGTAATGTTAAGAAACGCGTGGAGCGATCTCTTACTGATCCAAGCTTTGTAGTCACAACCTATGAAGGCCAACACACACATCCAAGTCCACTTATGGGTCGCGCATCAGGATCTCCAATTGCCACCAACTTCAACTTAGGTTCAGCAAATTACATATCCCAATATTATAATCAGCACCATCAACAAGTCCTCGCCAATACATTGTCCTCTTTGGGTTTCCCTCCTCCTTATACTCAAGAGAGACCACTAGAGGCAACTGCTGCATTGCTAAGGGACCATGGCCTTCTTCAAGATGTTGTTCCTTCACATATCTATGTTGAAGGAAGACTACATGATAACTCCACCACTAATGCTTCTATGTGA 804 0.4366 MEEPINGSSLFPGGYPFQFDFSEEKNSTLGFMELLGVQDCTSPLLDSPHLKESEVLNHQPPTPNSSSISSASSDELHNHNKTVDKQPPKQLKAKKTNQKRQREARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSLTDPSFVVTTYEGQHTHPSPLMGRASGSPIATNFNLGSANYISQYYNQHHQQVLANTLSSLGFPPPYTQERPLEATAALLRDHGLLQDVVPSHIYVEGRLHDNSTTNASM. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05555 267 ProSiteProfiles WRKY domain profile. 112 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g05555 267 Gene3D WRKY domain 101 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g05555 267 FunFam WRKY transcription factor 57 103 177 - -
Seca1g05555 267 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 56 203 IPR044810 GO:0003700
Seca1g05555 267 MobiDBLite consensus disorder prediction 57 76 - -
Seca1g05555 267 SUPERFAMILY WRKY DNA-binding domain 109 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g05555 267 SMART WRKY_cls 117 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g05555 267 MobiDBLite consensus disorder prediction 77 91 - -
Seca1g05555 267 MobiDBLite consensus disorder prediction 54 102 - -
Seca1g05555 267 Pfam WRKY DNA -binding domain 118 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05555 Seca-Chr1 159242797 159244472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05555 54 254 WRKY Transcription Factor Family AT2G47260 49.784 3.16e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g05555 WRKY 8.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05555 - - ccaj:109814750 296.589