Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05549 ATGTCGAAGAGGAAGTTCGGATTCGATGGGTTTGGCATAAACCGTCAATCAACTTACAGTTTCGAGCGATCTCAAGCTCCTCAGCGACTCTACGTCCCTCCATCCTCGCGCCACGGCCATGACAATTACGAGGACACCGACCTCGACAACATCGAATACGACGACAACGATGGTTCTAAGGAAGAAGGGGACAACAGCAAGAAGAAAGGCGGTGACGAGGACGACGAAATCGATCCCCTTGATGCATTCATGGAAGGGATTCACGAAGAGATGAGGGCGGCGCCGCCTCCGAAGCCGAAGGAGAAGGAAGAGGACAGGTACAAAGATGACGAAGAGGACGATCCCATGGAGAGTTTTTTGAGGGCGAAAAAGGACCTAGGGTTGACGCTGGCGTCGGAGGCACTGCATGCTGGGTATGATTCTGATGAAGAGGTTTATGCTGCTGCTAAGGCTGTGGACGCTGGTATGTTAGAGTATGATTCTGATGATAACCCTATTGTTGTTGACAAGAAGAAAATTGAGCCCATTCCTGCCCTGGATCACACTTCCATTGATTACGAGCCCTTCAATAAGGATTTTTATGAGGAGTCCCCTTCAATATCAGGTATGAGTGAGCAAGATGTAACCGAATACAGGAAGAGTTTGGCTATTCGCGTATCTGGTTTTGATGTTCCTAAGCCAATAAAAACATTTGAGGACTGTGGGTTTCCTGCACAAATTATGAATGCTATAAAAAAACAAGGTTATGAGAAGCCTACATCTATACAGTGCCAAGCTTTGCCGGTTGTGCTTTCTGGTAGAGATATTATTGGTATAGCAAAAACTGGTTCTGGTAAAACGGCTGCTTTTGTGCTTCCTATGATTGTGCATATTATGGATCAGCCTGAACTTCAGAAGGATGAGGGTCCTATAGGAGTGATATGTGCACCTACAAGAGAATTGGCACATCAGATATATCTCGAGTCCAAGAAATTTGCAAAATCATATGGTTTACGCGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGATATGCTAAAAATGAAGGCATTAACAATGATGAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCAGATCGCCAAACTTTACTCTTTTCTGCAACAATGCCTCGAAGAGTTGAGAAGTTGGCCAGGGAAATCCTTACTGATCCTGTTAGAGTAACGGTTGGGGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCTTCTGATTCTGAGAAATTGCCTTGGCTTTTGGAGAAGCTGCCTGAAATGATTGATCAAGGTGATACCTTAGTATTTGCTTCCAAGAAGGCCACTGTGGATGACATTGAATCACAATTGGTTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAAGCTTCTCGTATGGAAATTTTACAGAAGTTTAAGTCTGGCATTTACCATGTGCTTATTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAGTCAATTAAAACAGTGGTGAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGTATTGGAAGAACGGGCCGTGCTGGTGACAAGGATGGAGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAATTGCTGCTGGTCAGAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGAAGATTCAGGTCCAAACGTGATGCAAGAAAAGGAGGCGGGAGAAAAGGAAGAGGCAGAGGTGGAGGTGGCGGTGGGGGTGGCAGAGGAGTGCGCGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCAGAGTCCAATAACGCACCATCTAACACAGTTCCAAGTCGATCTTCCACTGTAAATTCTCTGCGAACAGGAATGATGTCACAATTTAGGAGTAGCTTTGTTGCTGCATCATCAAACTCTCAAAATCAAGGATTCAGTAACAATACAGGCATGACTGCTAATAAGAGACCAGCACTCGCTGGCTTTGTATCCGGTGGATCAATTGGCGGTGATATAAATATTCACCAGCATACTGCTTCACCCAGTCCTGCTACATCAGCTGTAAATTCCACTAGTCAAAGTTCTGGTGTAAATTCTGGTCAGAACAGCACAAACAGCAGTTCTAAACCCAGAGAAAGGCGAAGGCCATCAGGTTGGGATAGATAG 2331 0.4487 MSKRKFGFDGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDGSKEEGDNSKKKGGDEDDEIDPLDAFMEGIHEEMRAAPPPKPKEKEEDRYKDDEEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMLEYDSDDNPIVVDKKKIEPIPALDHTSIDYEPFNKDFYEESPSISGMSEQDVTEYRKSLAIRVSGFDVPKPIKTFEDCGFPAQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKDEGPIGVICAPTRELAHQIYLESKKFAKSYGLRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRRVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDDIESQLVQRGFKVAALHGDKDQASRMEILQKFKSGIYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGRGRGGGGGGGGRGVRGVDFGLGIGYNPESNNAPSNTVPSRSSTVNSLRTGMMSQFRSSFVAASSNSQNQGFSNNTGMTANKRPALAGFVSGGSIGGDINIHQHTASPSPATSAVNSTSQSSGVNSGQNSTNSSSKPRERRRPSGWDR. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05549 776 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Seca1g05549 776 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Seca1g05549 776 MobiDBLite consensus disorder prediction 727 762 - -
Seca1g05549 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 607 IPR027417 -
Seca1g05549 776 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Seca1g05549 776 Gene3D - 192 436 IPR027417 -
Seca1g05549 776 MobiDBLite consensus disorder prediction 727 776 - -
Seca1g05549 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 438 IPR027417 -
Seca1g05549 776 Pfam Helicase conserved C-terminal domain 464 569 IPR001650 -
Seca1g05549 776 CDD DEADc_DDX42 240 436 - -
Seca1g05549 776 MobiDBLite consensus disorder prediction 614 674 - -
Seca1g05549 776 MobiDBLite consensus disorder prediction 13 31 - -
Seca1g05549 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 609 IPR001650 -
Seca1g05549 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Seca1g05549 776 SMART helicmild6 488 569 IPR001650 -
Seca1g05549 776 Gene3D - 437 613 IPR027417 -
Seca1g05549 776 SMART ultradead3 248 450 IPR014001 -
Seca1g05549 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Seca1g05549 776 CDD SF2_C_DEAD 447 579 - -
Seca1g05549 776 MobiDBLite consensus disorder prediction 1 114 - -
Seca1g05549 776 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 184 609 - -
Seca1g05549 776 MobiDBLite consensus disorder prediction 656 674 - -
Seca1g05549 776 MobiDBLite consensus disorder prediction 60 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05549 Seca-Chr1 159171611 159176116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05549 226 579 Eukaryotic Initiation Factors Gene Family AT3G19760 33.148 1.08e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05549 K12835 - gmx:100814854 1294.26