Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05548 ATGACAGAGCCTTTTTTTTGGTCGGCTGATTTTGTATGTGCAGATACGTTGGAAAAGGTTCAAGCCATATTGCTGAAATGGATGCTTATATTATCATGCCTGGTATTTATAGTCGAGTCTGGTATAAATGATAAAACACTGGACCCACCATCGCTGTCTGTGGCTAGATCACCTTTGGCCTCTTATGTTGTCCACAATCTGCCTCTACCATCAAATTCCCATAGGTTAAAGCATGTGCATTCTCATGGTGCACCAATTGCAGCACCGGCCAATCCTCCTTCCTATGGTCATTTTGCAAATACTGGCCAACCCCCTAAAAGATCACATTTCTCCATACCATTCAAGAAGAGGAGTGAATGGAAACCTCCGATTTCTGGCTTTAAAGATATTGCTCCTATTCATTCTACTGCAGCTGCAGTCCCTTCTGCTTTGGCTCAGCCACCATTGTCCCCTTATGTTTCCAATTGTTGTAAACAAGACATGGTATTGAAACGAGGCAGTAAGAGTTGCCACTGTGTGTATCCCATAAAGCTAGAGATTCTTCTTTTGAGTGTCTCTCAAAATCCTAATTGGAATGTTTTTCTTGATGAATTAGCTACCCAGCTTGGGTTGCAAAATACCCAGATTGAACTGATAAACTTTTATGTACTCAGCTTATCAACATTAAATATATCAATGGATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAATGAAGCTTCTAAAATAAACACTTCACTTTCAAAGCAGAAGGTTCAACTAGACCCTGAATTAATAGGTGGATACAGACTTCTCAATATAACGTGGTTTGAACCTCCGCTTCCTTCTCAAGCTCCTACTTTAGCTGCATCGCCTGTGAAAGCACCTTTATATCATTCACCTACAGCTACATCATCGAGTTCTTTGAATAGGGGAAGGCATTCAAATCTATTTCTTATTCTTGGAATTGCTATTGGCATACTCTTCATTGCTATTGTATCTGTACTTATATTTTGTTCGTGTACGTTGCTGCCGAAGGAAAAAACACCTCCCACAGAAACTGAAAAGCCAAGGACGGAAAGTACTGTTTCTGCTGTGGGTTCTATTCCCCACCCAAGCAGCACACGATTTATTGCTTATGAAGAACTTAAAGAAGCAACAAACAATTTTGAACCAGCGAGTGTACTTGGAGAAGGAGGGTTTGGTAGAGTTTTTAAAGGTGTCTTAAATGATGGTACTTCTGTAGCAATTAAGAGGCTTACAAGTGGAGGGCAACAAGGTGACAGAGAGTTTCTGGTTGAGGTTGAAATGCTTAGCCGATTGCATCACCGTAACCTTGTAAAACTGGTGGGATACTATAGTAGTCGTGACTCATCACAAAATCTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAAGCCTGGCTTCATGGTCCCTTGGGAATAAATTGTCCTTTGGATTGGGACACCAGAATGAAAATTGCTCTTGATGCTGCAAGAGGACTTTCATACCTGCATGAAGACTCACAGCCCTGTGTAATACATAGAGATTTCAAGGCATCCAACATATTGCTTGAGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAGGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGCACATTTGGGTTAGTCTCAGCTAGGCCAATCCTGAGAGACAAGGACCGGTTGGAAGAGATTGCTGATCCCAAACTTGGGGGAAAGTATCCAAAGGAAGATTTTGTTCGTGTGTGCACTATTGCTGCAGCCTGTGTTGCTCCTGAAGCAAGCCAACGACCCACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGCATCACAGAATATCAAGATTCTGTGTTAGCCTCATCCAATACACGGCCAAACCTGAGACAGTCCTCTAGCACTTTTGAGTTTGACGGAACATCTTCAATGTTCTCCTCAGGTCCTTACTCTGGTCTAAGTGCTGCCTTTGACAATGAGAACATTTCTAGGACGGTGGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 2052 0.4211 MTEPFFWSADFVCADTLEKVQAILLKWMLILSCLVFIVESGINDKTLDPPSLSVARSPLASYVVHNLPLPSNSHRLKHVHSHGAPIAAPANPPSYGHFANTGQPPKRSHFSIPFKKRSEWKPPISGFKDIAPIHSTAAAVPSALAQPPLSPYVSNCCKQDMVLKRGSKSCHCVYPIKLEILLLSVSQNPNWNVFLDELATQLGLQNTQIELINFYVLSLSTLNISMDITPHKGISFSANEASKINTSLSKQKVQLDPELIGGYRLLNITWFEPPLPSQAPTLAASPVKAPLYHSPTATSSSSLNRGRHSNLFLILGIAIGILFIAIVSVLIFCSCTLLPKEKTPPTETEKPRTESTVSAVGSIPHPSSTRFIAYEELKEATNNFEPASVLGEGGFGRVFKGVLNDGTSVAIKRLTSGGQQGDREFLVEVEMLSRLHHRNLVKLVGYYSSRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGLVSARPILRDKDRLEEIADPKLGGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITEYQDSVLASSNTRPNLRQSSSTFEFDGTSSMFSSGPYSGLSAAFDNENISRTVVFSEDLHEGR. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05548 683 ProSiteProfiles Protein kinase domain profile. 384 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05548 683 FunFam Receptor-like serine/threonine-protein kinase ALE2 364 461 - -
Seca1g05548 683 PANTHER OS01G0750732 PROTEIN 555 630 - -
Seca1g05548 683 Gene3D Transferase(Phosphotransferase) domain 1 462 557 - -
Seca1g05548 683 Gene3D Transferase(Phosphotransferase) domain 1 558 634 - -
Seca1g05548 683 Gene3D Phosphorylase Kinase; domain 1 346 461 - -
Seca1g05548 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Seca1g05548 683 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Seca1g05548 683 SUPERFAMILY Protein kinase-like (PK-like) 370 648 IPR011009 -
Seca1g05548 683 FunFam Protein kinase superfamily protein 462 536 - -
Seca1g05548 683 Pfam Protein kinase domain 387 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05548 Seca-Chr1 159151354 159156536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05548 23 683 Receptor kinase-like Gene Family AT4G02010 62.676 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca1g05548 Pkinase 3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05548 - - gmx:100793528 1087.02