Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05544 ATGGACAGTAATGCCTCCCCCCAACTTGAGTCAGAAACATCTTCCGACCCCAAATCAGAAACTCAAGCATCCAAGAAACGGAAAATGGTTCAGAAAACAGTTGTGGCTGTGAGGATAGGAGAAAATGTTGGCAAGCTGAAGAATGAAGGGTTACCTTCTGATTTTTGGTCCTGGAGGAAATATGGACAAAAGCCAATCAAGGGGTCTCCATATCCAAGGGGGTATTATAGATGCAGCACATCAAAGGGATGTTCAGCCAAAAAGCAAGTTGAAAGATGCAGAACAGATGCTTCAATGCTAATCATCACCTATACCTCTACACATAACCATCCAAGTCCACCTGCTCTCTCCACAAATTCAGCCCAACAACCAAAAGAATCAGAAACTGAAACCACTGAAGACCTCACAGTTACCTCAAAGGAAGAAGATCAAGAAGAGGAAATGAATAATAAGCACACAAATGAAGAAAATTTTCATTACTTGCAATCTCCAATTCGGTGCTCAGAGGACATAATTATAGACCAAGAAGATCCTTTTAAATTAAACACTGAAAAAGGCCATGATGACAGAATAGATCTCTTGTTAGAGGAAGAGCCACTCTGTTATGCACAGTTGAAGAATTTGTCATCATCCAAATCAGAAGAACTTGACTTTTTCGATGAGCTTGAGGAGCTACCCATGTCTTCATCTTTCTTAAAATTTACGAGGAGCATTTTTTCCGATGAAAGGATTCCTGTTGCCCCTTCTTGA 750 0.4053 MDSNASPQLESETSSDPKSETQASKKRKMVQKTVVAVRIGENVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYRCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPSPPALSTNSAQQPKESETETTEDLTVTSKEEDQEEEMNNKHTNEENFHYLQSPIRCSEDIIIDQEDPFKLNTEKGHDDRIDLLLEEEPLCYAQLKNLSSSKSEELDFFDELEELPMSSSFLKFTRSIFSDERIPVAPS. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05544 249 Gene3D WRKY domain 39 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g05544 249 ProSiteProfiles WRKY domain profile. 47 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g05544 249 MobiDBLite consensus disorder prediction 106 151 - -
Seca1g05544 249 MobiDBLite consensus disorder prediction 1 31 - -
Seca1g05544 249 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 230 IPR044810 GO:0003700
Seca1g05544 249 MobiDBLite consensus disorder prediction 127 151 - -
Seca1g05544 249 FunFam WRKY transcription factor 65 36 113 - -
Seca1g05544 249 MobiDBLite consensus disorder prediction 1 18 - -
Seca1g05544 249 Pfam WRKY DNA -binding domain 54 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g05544 249 MobiDBLite consensus disorder prediction 106 126 - -
Seca1g05544 249 SUPERFAMILY WRKY DNA-binding domain 50 113 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g05544 249 SMART WRKY_cls 52 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05544 Seca-Chr1 159132120 159134003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05544 11 231 WRKY Transcription Factor Family AT4G01250 37.946 1.82e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g05544 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05544 - - gmx:100127368 398.667