Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05542 ATGGACCATTTTTCTTCCACAGCTTTGAATTTCAACAGAATCCACCAGATGGGTTATGGTTCTGTAGAAGAGGTTCTGTTCCATGAGAAAAACACTTTCTCTGGAATGGAATTGCTAAGAGAGACTAATCCTCTCCCTACTGAGAATGGAAAAGGAGCAATTATGTTAGAAGATCAAAATCAGCAACAAGAACTCCAAGTTAATAACTTGATGTTAGAAGAGATCAACTTTGGTCCTTATCTGCAACAAACACAACCTTTTCAGGAAACTACAGGGCTAAAGATTCACGGAATGGTAAATTCAGACCTTGTTGAACACAGTATGCAGGTGCCAACACCATCTTTAACATCTTTAGAACTCCTTAGAAATTATGGAAGCAGGTTGAAGAAGCTAAGTGGGCAAAACATAAACAACTCAAGCAACAATCTTGAAACCTCTCTGCATCACCAGAAGATGTCAACAGAAGAAATAATAAGAGTTGCTGGAGCAAGGTATGTTCAATATTCTGCTCATTGGAATGATAGTTTCTGCATCCCTATGCACCCTTATGGATTGGATCTTAGGGGTTTGTCTGAGGAAGAAAATAGAGACGTTGAACTTGCTCAGTTTCTCCTTGCTGCAGCTGAGAAAGTTGGTTGCAAACAATTTGAACGTGCAAGAAAGTTACTTCTCCGTTGTCAAAGGAATTCATCTCCCACTGGAAACACTGTTCAAAGGGTTGTCTTTCATTTTGCTCAAACACTTCGAGAGAGAATAGACAAAGAAACAGGAAGAGTGACACTAAAAGGATCAGAGAAAAATGAAGAAAGGGAATTGCTTCAAAAGATGGATACCAACAAGTCCCTTTTATGCCATAAAAAAATCCCTTTTAATCAAGTAATGCAATTCACTGGGATACAAACTATAGTGGAACATGTTGCATCTGAGACCAAAATTCATATGATAGATCTTGATATAAGAAGTGGGGTGCAGTGCACAGCTTTGATGCAAGCATTGGCTGAGCGCCAGAGTTGCAAGGTAGAGTTTTTGAAGGTAACTGCTATTGGATTTAATGCATGCAAGACCAATATAGAAGAGACAGGAAAAAGGTTAGTGAGTTTTGCTGAATCCTTGGACTTGCCCTTTTCATATAAGGCTGTTTTAGTCAGAGACATGGCTGAAATCAAGGAAGATCAATTTGAAATTGAAGAGGATGAAGCTGTGGCTGTGTACTCTCCTTATTTTCTAAGGACTATGATAGCAAGGCCTGATTGTATGGAAAAATTGATGTGGGTTATAAGAAATATTAGACCTTCTATAATGATAGTCCTTGAAATGGAAGCAAACCATAATTCACCCTCCTTTGTGAATCGCTTCATTGAAGCTTTGTTCTTTTACTCAGCTTTTTTTGATTGCCTTGAAACGTGCATAAAAGAGGATGATGAGTGCAGAATTATAACTGAAGCAATATTATCAGCAGGGATAAGAAACATTGTTGCTATGGAAGGCAGGGAAAGGACAGTTAGAAATGTGAAGATAGATGTTTGGAGAAGGTTCTTTGCAAGGTATAGAATGGTGGAAAGTGGATTTAGTGAGTCATCTTTGTATCAAGCTGAATTGGTTGCTAAAGAGTTTGCTTTTGGGAAATTCTGCACTATGGACAAGAATGGTAAGTGTCTATTAGTGGGATGGAAGGGGACTCCAATGCATTCTATCTCTGCTTGGAGGTTTCCTTGA 1716 0.3869 MDHFSSTALNFNRIHQMGYGSVEEVLFHEKNTFSGMELLRETNPLPTENGKGAIMLEDQNQQQELQVNNLMLEEINFGPYLQQTQPFQETTGLKIHGMVNSDLVEHSMQVPTPSLTSLELLRNYGSRLKKLSGQNINNSSNNLETSLHHQKMSTEEIIRVAGARYVQYSAHWNDSFCIPMHPYGLDLRGLSEEENRDVELAQFLLAAAEKVGCKQFERARKLLLRCQRNSSPTGNTVQRVVFHFAQTLRERIDKETGRVTLKGSEKNEERELLQKMDTNKSLLCHKKIPFNQVMQFTGIQTIVEHVASETKIHMIDLDIRSGVQCTALMQALAERQSCKVEFLKVTAIGFNACKTNIEETGKRLVSFAESLDLPFSYKAVLVRDMAEIKEDQFEIEEDEAVAVYSPYFLRTMIARPDCMEKLMWVIRNIRPSIMIVLEMEANHNSPSFVNRFIEALFFYSAFFDCLETCIKEDDECRIITEAILSAGIRNIVAMEGRERTVRNVKIDVWRRFFARYRMVESGFSESSLYQAELVAKEFAFGKFCTMDKNGKCLLVGWKGTPMHSISAWRFP. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05542 571 Pfam GRAS domain family 201 569 IPR005202 -
Seca1g05542 571 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 146 562 IPR005202 -
Seca1g05542 571 ProSiteProfiles GRAS family profile. 191 569 IPR005202 -
Seca1g05542 571 Coils Coil 53 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05542 Seca-Chr1 159119885 159121600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05542 198 570 GRAS Transcription Factor Family AT1G66350 31.016 1.64e-54 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca1g05542 GRAS 4.9e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05542 - - gmx:100791952 827.009