Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05541 ATGATATCATATTATCAGGAACAACATGGACAGGAAGCAATGGGCACGGTTGGAGCCTTGGTTGTGGCCAAGGTAAATTTATTGGTACAGAAAATGGAAGAGAAACGAATTGAATCAATAAAAGAAAAACTCCAAAGGAATAAGAAAAATCTACAATGTCAAGTTGCAAATGTCTTATCAGTAATATCAACAAGGGACTCATTACAAACTGACAAGAATACCATTCAAGTGCTTTCTTCTAGAATTGATCATCCTCTACGTAAGTTTGGTGGTATTTCTCGAGGTTTGGGAGAGAATGAATACATAAATAATCGAGACATCATATTTTCAAGAAGCATAAAGATCCCATATATAGAAAGATTGCCACCTTTTACATTTTGGATACATATGCCCAGAAATCAGAAAATGCTAGAAGAGCAATCTGTCATAGGGAAACGACAAATATACTATGACAAACATGGTGGTGAGACACTGGTGTGTAGTGATAGTGAGGAGGAATCAACAGAAGCTGACGAAGTCAAACATGACTTTAATGATGTTGAAGATCAAATTTTATGGATGGCATTTGAGGAACATGGGTTCACTGAGGAGGTGTTGGATATTGTTTCGAAGCTTGTCAGAGGTACCGTTTCAGAAATCCAGGAAAGGTATAAATATCTCAAGGAAAAGAACGCAAGGAGGTTGGACCAGCATTCTAAAGATCCTGGAGAACGTGAATCTCTTATTGGCATATCTTTGGATAAAACCTTGAATGATGCTTTGGATACTTTTGATAATCTTTTTTGCCAGCAGTGTTTTCAAATCTTTGATTGTCCTCTACATGGTTGCTCACAACCTATATGTCCTAGTGAAAAGCAGAAAGTTTGGTTTGAACCAGAAGGTGACAGGAAACCATGCGGTGATCATTGTTACCTTAAGTTAAAGGATGTCAAGTTTTTGTCAGAAAAATATCCTTCAAAGTCTTCTCAAGATAGAAAAAAGAAAACAATGGAAGAGGTGGATGGGATATTGGCATGGTCCAATGCAAAAGAGCCTTGTAATCAAAGTTATAATGCTATCAAGGAGAAAGAAAGATGTGATTATGTGACAACCCCTTTTATAAAAGAAGTTGGATGTCATGAAGATCTAAATTCAAATTCAAATATGCTTGTATCAGTATCAAAATCTATGGGAAAACATAAGGACATGCATATATCAAACTTAACATTATGTGACTCAACTTCGCCTCCTGATGAGTCTCAGAGTTCTTGTAAGAAGTTGAAGAGAATCCAAAATGATATAGTTACGACAATTGGTGATGATAACAGGGACCTTAATTTGGATTCTTGTGATGATGAAAACCACACAATTACTTATGCAACTTTGAAAAATCTTATTGAACACACTTCAAATAAATTGACAATTTCGGATAGCACATGCCATGGTGTGTGTGAAAAAAGTGCTGGAGATGGACAAAAAGATATCACTAATGAGATAGAAATTGAGCACTCGTCTGATTCAATGGAAGTGCAAGTTGAAGAGATGCTAAGTTTCTCAGATTGGAAACCTCTGGAGAAAGAACTATATTTGAAAGGAGTAGAAATATTTGGGAGAAATAGCTGCCTTATAGCACGAAACTTACTTCCTGGCTTGAAGACCTGCATGGAAGTAGCTAGCTACATGTATGTTGGAGAAGTGTCAGTGCCCGACAGATCAATACTAAGTTCAATCATGGACAAAAATGGACAAGTTAATGCAAATTGCACAGACCGAGAGATGGCATCAAGGTCACGGTTGCTGCGAAAAAGACGTAAAGCTAGAAAGTTTAAATATTCTTCCAAGTCTGCTGGCCTCCCATCTACATGGAAAAGAATTACTGCTGGAAAAAGCGAAGCTTACAAACAGTATAAACCTTGTGGATGTCAGGGAATGTGTGGAAAGCAATGTCCTTGTCTTCAAAATGGATCATGCTGTGAAAAATATTGTGGGTGTTCAAAGCTCTGCAGAAATCGGTTTAGAGGATGTCTTTGTGCTAAGAGTCAATGCAAAAGTCGACAATGTCCATGCTTTGCAGCTGAAAGGGAGTGTGACCCAGATGTCTGTCGAAATTGCTGGGTTAGTTGTGGCGGTGGTTCATTAGGAGAGCCACCTCGACGTGGAGATGGTCAATGTGGAAATATGAGGATTCTTTTAAGGCAAAAACAGAGGATTCTTTTGGGAAAGTCTGATGTTGCAGGATGGGGAGCCTTCTTAAAGGAACCAGCTAACAAAAATGATTACCTTGGAGAGTACACGGGTGAATTGATCTCTCATTTAGAAGCTAATAAACGTGGGAAAATATATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGGCAAGTGTTTCTTTAATGTACGTTGTTGATGCTTGTCGCAAAGGAGACAAGTTGAAATTTGCTAACCACTCAGTAAAACCCAATTGTTATGCAAGGATTATGCTTGTTGGTGGGGATCATCGAGTAGGCATATTTGCCAAGGAACGCATTGAAGCTGGTGAGGAGCTTTTCTATGATTATTGCTACGGTCCACAGGAAGCACCATCATGGTTTTAA 2580 0.3833 MISYYQEQHGQEAMGTVGALVVAKVNLLVQKMEEKRIESIKEKLQRNKKNLQCQVANVLSVISTRDSLQTDKNTIQVLSSRIDHPLRKFGGISRGLGENEYINNRDIIFSRSIKIPYIERLPPFTFWIHMPRNQKMLEEQSVIGKRQIYYDKHGGETLVCSDSEEESTEADEVKHDFNDVEDQILWMAFEEHGFTEEVLDIVSKLVRGTVSEIQERYKYLKEKNARRLDQHSKDPGERESLIGISLDKTLNDALDTFDNLFCQQCFQIFDCPLHGCSQPICPSEKQKVWFEPEGDRKPCGDHCYLKLKDVKFLSEKYPSKSSQDRKKKTMEEVDGILAWSNAKEPCNQSYNAIKEKERCDYVTTPFIKEVGCHEDLNSNSNMLVSVSKSMGKHKDMHISNLTLCDSTSPPDESQSSCKKLKRIQNDIVTTIGDDNRDLNLDSCDDENHTITYATLKNLIEHTSNKLTISDSTCHGVCEKSAGDGQKDITNEIEIEHSSDSMEVQVEEMLSFSDWKPLEKELYLKGVEIFGRNSCLIARNLLPGLKTCMEVASYMYVGEVSVPDRSILSSIMDKNGQVNANCTDREMASRSRLLRKRRKARKFKYSSKSAGLPSTWKRITAGKSEAYKQYKPCGCQGMCGKQCPCLQNGSCCEKYCGCSKLCRNRFRGCLCAKSQCKSRQCPCFAAERECDPDVCRNCWVSCGGGSLGEPPRRGDGQCGNMRILLRQKQRILLGKSDVAGWGAFLKEPANKNDYLGEYTGELISHLEANKRGKIYDRANSSFLFNLNDQASVSLMYVVDACRKGDKLKFANHSVKPNCYARIMLVGGDHRVGIFAKERIEAGEELFYDYCYGPQEAPSWF. 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05541 859 SMART set_7 728 855 IPR001214 GO:0005515
Seca1g05541 859 ProSiteProfiles SET domain profile. 728 849 IPR001214 GO:0005515
Seca1g05541 859 Pfam CXC domain 667 698 IPR041355 -
Seca1g05541 859 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 21 859 IPR025778 GO:0031519
Seca1g05541 859 CDD SET_EZH 728 850 - -
Seca1g05541 859 SUPERFAMILY SET domain 630 851 IPR046341 -
Seca1g05541 859 FunFam Putative histone-lysine N-methyltransferase EZH2 629 851 - -
Seca1g05541 859 Coils Coil 30 61 - -
Seca1g05541 859 ProSiteProfiles CXC domain profile. 615 714 IPR026489 -
Seca1g05541 859 SMART sant 510 560 IPR001005 -
Seca1g05541 859 SMART sant 173 223 IPR001005 -
Seca1g05541 859 Gene3D SET domain 629 850 IPR046341 -
Seca1g05541 859 Pfam SET domain 739 848 IPR001214 GO:0005515
Seca1g05541 859 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 23 854 IPR045318 GO:0006338|GO:0042054
Seca1g05541 859 SMART CXC_2 663 700 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05541 Seca-Chr1 159106362 159112234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05541 727 857 C2H2 Transcription Factor Family AT2G23740 29.577 1.34e-10 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca1g05541 SET 5.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05541 - K11430 gmx:100808730 1005.36