Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05536 ATGGCTTCAATTCAACGACCGGCGAGTTCCGGATCTGAAGGAGGAGATCTGAAACATGGAGCCATAGACGAGAGGAAGAGGAAGAGGATGCTGTCGAACCGTGAATCCGCGAGGCGTTCACGGATGAGAAAGCAGAAGCAGATGGAGGATTTGAACGATGAAGTCGGCAAATTGCAAACCGCAAATATGAAGCTGGCGGAGACCATAAAGGCAAAGGAAGAAGCCTGTATTGAAACTGAAGCAGCTAACTCCATCCTCAGGGCTCAGGTTATGGAATTGGGTGATCGATTGCGATTTCTGAACTCTATTCTTGAGATAGCTGAAGAGGTTAGTGGATTCTCTGTTGAGATCCCTGAGATTCCAGATCCTCTTCTTAAACCGTGGCAGATTCCTCACCTCACACAACCAATCATGGCTTCTGCAGACATGTTCCTGCATTGA 441 0.4785 MASIQRPASSGSEGGDLKHGAIDERKRKRMLSNRESARRSRMRKQKQMEDLNDEVGKLQTANMKLAETIKAKEEACIETEAANSILRAQVMELGDRLRFLNSILEIAEEVSGFSVEIPEIPDPLLKPWQIPHLTQPIMASADMFLH. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05536 146 CDD bZIP_plant_GBF1 26 76 IPR045314 GO:0003700|GO:0006355
Seca1g05536 146 MobiDBLite consensus disorder prediction 17 53 - -
Seca1g05536 146 MobiDBLite consensus disorder prediction 1 53 - -
Seca1g05536 146 Gene3D - 23 79 - -
Seca1g05536 146 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 142 - -
Seca1g05536 146 Coils Coil 34 68 - -
Seca1g05536 146 SUPERFAMILY Leucine zipper domain 25 73 IPR046347 GO:0003700|GO:0006355
Seca1g05536 146 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 23 70 IPR004827 GO:0003700|GO:0006355
Seca1g05536 146 Pfam bZIP transcription factor 25 76 IPR004827 GO:0003700|GO:0006355
Seca1g05536 146 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 28 43 IPR004827 GO:0003700|GO:0006355
Seca1g05536 146 SMART brlzneu 21 85 IPR004827 GO:0003700|GO:0006355
Seca1g05536 146 FunFam BZIP transcription factor 23 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05536 Seca-Chr1 159078384 159078824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05536 1 144 bZIP Transcription Factor Family AT3G62420 54.167 3.01e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g05536 bZIP_1 3.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05536 K25786 - gmx:780550 220.32