Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05531 ATGATGACGCATATTGTGCGTCATGTGAACATGAATTCAGAAAATGTTCTCTCCCAATTTCAATCAGAAATCGAGCATTCAGCTAGACTGATACACCCTTTGAATTCGTCCTCAATCAATTTTGCAAGATTGCTAAATTCAACTCTAAAAGCTAATGAAATCTCATTCTATGATATTGAGACCAAGGTGGCTCCGTTATTATTTCAAGCATATGAGACGGTTCTTTACTTAAACCAAATCTCATACATAGAAATGAATGGCCTCTTTTTCTCATTTTATACTGATCATGATCAAGTCATGGCAGTATACTCAAACTCATCATCACCATTGATTTCTCCTTGGGGTGCTTCAAATGCTAGAGTATACTATATTCAGCATGTAAATTGTGACACTGGAGAGTTATATGGTGATGCTATAAGGTCTGATTTTCAGCCATCTATTGGTGTAAGTTGGTCCGGTGAAATTGTTAATAGTTCAAATGGGCATGCTTCATTAGGAACCAAATGGAACAATGGCCATGATCTCCTATTCACTAGTTCAGCTAGAATCACAAATACAGGGGTGATTTCTCTGGGTTTTCTAGCAACATCAATAGTGGATTTTTTCACTAGTGTTGGTCACCAAGGTGCAAATTTGTATTTGGCTACCAAAGATGGAAAAATTCTTGTAGAAGGGATCCAACATACTAATTTGCTCATTTCTAATGAAACGGTTTCCTTCCACTCAGTGGATGTAAATGGTAACCAGACAAGTTATGATGGCACTGTTTCATGTAAAGATGGAGTTGTTGCTTCAATTTTGACAATTCAAGATAGTGAGTATTTGATTCGCTGCTCCCCCATTGATATAATGGGAGTAGAATCGGTGTATGTTTTGGCTGTCCCACAAAATGGAAATGCCCACTTTGTTCAGAGCATCAAGAAAAATGCATTGGTGCTATTGACTGTGATGATGGTTATGATATTCATTGCTATAGCAAGTTTTCTATTTACAAATGCAAGATTTGCAAGGAGAGAAATGCATTTGTGTGGGTCACTCATCAAACAAATGGAAGCAACCCAACAAGCTGAGCGAAAGAGTATGAATAAGAGCCTTGCTTTAGCAAGTGCCAGCCATGATGTTCGCAATGCACTGGCAGGCCTAACTGGTTTGATAGAGATGTCAGATCAGGAAGTTGTCCATGGTTCAAAATTACACACCAACTTAAGACTCATGCATTCTTGTACCAAAGATTTACTAGGTAAACTACATTATTTTCTTTTAATAGGGCTCTTGAATTCTATACTTGATGCAAGCAAAATCGAAGCAGGCAAAATGCAGCTTGAGGAAGAGGAATTTGATCTATTCCAATTCCTAGAAGATGTAGTTGATTTCTACCATCCTGTGGCTATGGAGAAAAGAGTAGATCTTATTTTGGACCCTTGCAATGGATCCCTACTAAGATGTTCACAAGTGAAAGGTGACAGAGGAAAGCTTAAACAAGTTTTAAGCAATTTAGTGAACAATGCTGTTAAATTTACTAATGAGGGGCACATAGCAGTTCGAGCATGGGCTCAGAAGCCTACCTTGAAGAGCTCTAGAGTTGCTACTAATCGATACAGCTTCATCAAGAGACTTTTGTCACGCTTACTGCATAGGAAAAATGAATCACATGATGATGTGGAAGCTGTGAATTCAATCCAACAAGATCCAAGTTGTATGGATTTTACGTTTGAAGTGGTTGATACAGGCATAGGAATTCCTAAAGAGAAGTACAAGTCTGTTTTTGAGAATTATGTCCAAGTTAAAGGAACTGCTCCTAGCCAACAACAACAAGGAACTGGCTTGGGACTTGGTATTGTCCAGTCATTGGTACGTTTGATGCATGGAGATATTGGAATTGTGGAGAAGGATATTGGTGAAAAAGGAACCTGCTTTAGGTTCAATGTGCTTCTCACTGTATGTGAGACAGGGAGTGGTGGTGGTAGAAGCACAATAAAGGGTCAATTTGGATCAACAATAAAGAGTCCCATGTTACCTGCTTATAGTCCTAGACCAGAGGTATCTGGAGTTGTTCTTTTGATTCAAGATGAGGAGCGCCAAAGGATTACTCAAAGGTTCATAGAGAGCTTATGGATCAAAGTTAAGGTTGTGAAGGATTGGAGACACCTGCCTGAAACTCTCATGATGATCAAACAAAAAGGGTTTGATTCCAATAGTTTAAGTCCTCCAAGGTCTCCAGAGTTGAGTTTTATGTCTTTATCTCGTGATAACTCTAGTAGCAGAGGTAAAGGAGTCTCTTTGAGTGCTATGGATGGAACTGACTATATAAATTCATTCCATAGTGATATTGAAGCTACCCTTGGTTTCTACCTGCTTGTGATTGATGCTACTCCAGAGCAAATTTCAGAACTTTCTTGGGTGGTATCTGATTTCAAAAGAGACCTTTCCAATCCTTATAGGGTTGTTTGGTTAGAAAATCCACTCATGAAGGATGGTGTTAATTCCAGAAACTTTGAAGAGTATCTTTCTAATTCAAATGACATTGTCTTATCCAAACCATTTCATGGTAGTAGATTACTCCAAGTTATAAGGCTTCTTCCAGAGTATGGTGGTGATTGGCAATGCAGTTCTAGTGGAGGAAAGAGAGAAACAAGGTCTCATGTTTCCCCAACAATTGAATATGGCAGTTCAAGTGGTTGTAAGGAAACACAGGAATCCTTTGGACATCAACCTTATGATATGTCTAAAGCAGGAAAATTTGTGGTTCATGAAGGAGAAATAGAAGAATGTGAAGACACAAGCAATGGCAAACCCTTGAGTGATATGAAAATTCTGGTTGTTGATGACCAGGTAATATTACGAAGGATAGCTAAGGCTAATCTTGAATCACTTGGTGCTTCTATGGAGGAATGTGAGAATGGAGAACAAGCTGTGTGGCTAGTTAGAGAGGGTCTGAATCCCAAACCTCCATTTGATTGTATCTTAATGGACTGCCAGATGCCAGTAATGGGTGGATACGAGGCAACAAGGCAGATAAGGGAAATGGAGAGGCCCTATGGTGTTCACATTCCTATCATTGCATTAACTGCAAATACAGGGGATGAAGCAAAATTGTCAATAGAAGCTGGAATGGATGGTCACTTGGAAAAACCCATCAACAAAGAGAAACTACTTGAAGCCATCAGTAACGTATGTATTAAAGAGTGA 3189 0.3901 MMTHIVRHVNMNSENVLSQFQSEIEHSARLIHPLNSSSINFARLLNSTLKANEISFYDIETKVAPLLFQAYETVLYLNQISYIEMNGLFFSFYTDHDQVMAVYSNSSSPLISPWGASNARVYYIQHVNCDTGELYGDAIRSDFQPSIGVSWSGEIVNSSNGHASLGTKWNNGHDLLFTSSARITNTGVISLGFLATSIVDFFTSVGHQGANLYLATKDGKILVEGIQHTNLLISNETVSFHSVDVNGNQTSYDGTVSCKDGVVASILTIQDSEYLIRCSPIDIMGVESVYVLAVPQNGNAHFVQSIKKNALVLLTVMMVMIFIAIASFLFTNARFARREMHLCGSLIKQMEATQQAERKSMNKSLALASASHDVRNALAGLTGLIEMSDQEVVHGSKLHTNLRLMHSCTKDLLGKLHYFLLIGLLNSILDASKIEAGKMQLEEEEFDLFQFLEDVVDFYHPVAMEKRVDLILDPCNGSLLRCSQVKGDRGKLKQVLSNLVNNAVKFTNEGHIAVRAWAQKPTLKSSRVATNRYSFIKRLLSRLLHRKNESHDDVEAVNSIQQDPSCMDFTFEVVDTGIGIPKEKYKSVFENYVQVKGTAPSQQQQGTGLGLGIVQSLVRLMHGDIGIVEKDIGEKGTCFRFNVLLTVCETGSGGGRSTIKGQFGSTIKSPMLPAYSPRPEVSGVVLLIQDEERQRITQRFIESLWIKVKVVKDWRHLPETLMMIKQKGFDSNSLSPPRSPELSFMSLSRDNSSSRGKGVSLSAMDGTDYINSFHSDIEATLGFYLLVIDATPEQISELSWVVSDFKRDLSNPYRVVWLENPLMKDGVNSRNFEEYLSNSNDIVLSKPFHGSRLLQVIRLLPEYGGDWQCSSSGGKRETRSHVSPTIEYGSSSGCKETQESFGHQPYDMSKAGKFVVHEGEIEECEDTSNGKPLSDMKILVVDDQVILRRIAKANLESLGASMEECENGEQAVWLVREGLNPKPPFDCILMDCQMPVMGGYEATRQIREMERPYGVHIPIIALTANTGDEAKLSIEAGMDGHLEKPINKEKLLEAISNVCIKE. 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05531 1062 SMART REC_2 936 1055 IPR001789 GO:0000160
Seca1g05531 1062 PANTHER TWO-COMPONENT HISTIDINE KINASE 13 1056 - -
Seca1g05531 1062 CDD REC_hyHK_CKI1_RcsC-like 938 1055 - -
Seca1g05531 1062 ProSiteProfiles Response regulatory domain profile. 937 1059 IPR001789 GO:0000160
Seca1g05531 1062 Gene3D - 916 1059 - -
Seca1g05531 1062 Gene3D - 439 651 IPR036890 -
Seca1g05531 1062 Pfam Response regulator receiver domain 938 1055 IPR001789 GO:0000160
Seca1g05531 1062 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 350 439 IPR036097 GO:0000155|GO:0007165
Seca1g05531 1062 MobiDBLite consensus disorder prediction 730 758 - -
Seca1g05531 1062 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 487 645 IPR003594 -
Seca1g05531 1062 ProSiteProfiles Histidine kinase domain profile. 369 647 IPR005467 -
Seca1g05531 1062 MobiDBLite consensus disorder prediction 871 894 - -
Seca1g05531 1062 SMART HKATPase_4 487 647 IPR003594 -
Seca1g05531 1062 SUPERFAMILY CheY-like 932 1058 IPR011006 -
Seca1g05531 1062 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 642 IPR036890 -
Seca1g05531 1062 Gene3D - 349 438 - -
Seca1g05531 1062 PRINTS Bacterial sensor protein C-terminal signature 605 623 IPR004358 GO:0016310|GO:0016772
Seca1g05531 1062 PRINTS Bacterial sensor protein C-terminal signature 587 597 IPR004358 GO:0016310|GO:0016772
Seca1g05531 1062 PRINTS Bacterial sensor protein C-terminal signature 569 583 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05531 Seca-Chr1 159019334 159025417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05531 4 1048 Histidine Kinase Gene Family AT2G47430 37.766 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca1g05531 HATPase_c 2.1e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05531 - - gmx:100790376 1204.12