Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05528 ATGAAAGATATGGAAGAGATTGTCTTGTTAGTCGATGATTTGAAGTTACTTTCTGGGGTTTCTCGCTGTAGAATATGCCATGAAGAAGAATTTGAGAGCTTGAAAAGCTTAGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCACATAGAGATTGCATACAGAGATGGTGTAACGAGAAAGGAAATACAATCTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACTGCTCCTCCAAAGAAGTCTCAGATAAATGATGAAGCAATGTCAACTAGCAGTGAGGAAGAAACGTCAAACGGAAGAAGAGAGGGTATGGTGGAAGGAGTGGCAATGGAAAGCGATTACTCTGAATGCAGTTCTGCTGCTGACAAAAGCGCGTCTTGCTGTCGAACGCTAGCATTAGCTGTAAGCATATATTTGCTTAATCAAATTCATAATTATTTTTAA 456 0.3947 MKDMEEIVLLVDDLKLLSGVSRCRICHEEEFESLKSLEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYTAPPKKSQINDEAMSTSSEEETSNGRREGMVEGVAMESDYSECSSAADKSASCCRTLALAVSIYLLNQIHNYF. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05528 151 SMART ringv_2 22 71 IPR011016 GO:0008270
Seca1g05528 151 Pfam RING-variant domain 23 70 IPR011016 GO:0008270
Seca1g05528 151 SUPERFAMILY RING/U-box 21 75 - -
Seca1g05528 151 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 21 144 IPR033275 -
Seca1g05528 151 MobiDBLite consensus disorder prediction 78 106 - -
Seca1g05528 151 FunFam E3 ubiquitin-protein ligase MARCH4 12 80 - -
Seca1g05528 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 80 IPR013083 -
Seca1g05528 151 Pfam Protein of unknown function (DUF3675) 76 144 IPR022143 -
Seca1g05528 151 CDD RING_CH-C4HC3_MARCH 23 70 - -
Seca1g05528 151 ProSiteProfiles Zinc finger RING-CH-type profile. 15 77 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05528 Seca-Chr1 158984582 158987750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05528 23 111 C3H Transcription Factor Family AT2G37950 32.222 1.39e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05528 - - gmx:100802379 230.72