Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05521 ATGGCGCATCGAAGAGCCAAGCTGTTGTTCCTTCTATGCGCTCTCTGCTATTCTCTCAATGCCATTGCCGGAAAGAGCTATTACGATATACTTCAAGTGTCGAAGGGTGCATCGGATGAGCAGATAAAGAGGGCGTACCGGAAACTGGCATTGAAGTACCATCCTGATAAGAACCAGGGCAATGAAGAAGCTAATAAGAGATTTGCTGAGATTAACAATGCATATGAAGTATTGTCGGATAGCGAGAAGAGAGGTATTTATGACAGGTACGGTGAAGAAGGTTTGAAGCAGCATGCTGCTAGTGGAGGCAGAGGTGGAGGAATGGGAATGAACATCCAAGATATTTTTAGCTCTTTCTTTGGTGGGGGATCAATGGAGGAGGAAGAGAAAATTGTGAAAGGGGATGATGTTATTGTTGAATTGGATGCAACCCTTGAAGATTTGTACATGGGAGGTTCCTTGAAGGTTTGGAGGGAGAAAAATGTTCTAAAGCCAGCACCTGGAAAGAGACGCTGTAACTGTAGAAATGAGGTTTATCACAGGCAAATTGGGCCTGGGATGTTTCAACAGATGACTGAGCAGGTCTGTGAGCAATGCCCTAATGTCAAATATGTAAGGGAGGGGTATTTCATCACTGTTGATATTGAGAAAGGGATGCAAGATGGGCAGGAGGTGCTATTTTATGAGGACGGCGAGCCCATAATTGATGGAGAATCTGGAGATTTGAGGTTTCGTGTCCGGACTGCACCTCATGAACTCTTCAGAAGGGAAGGCAATGACTTGCACACCACTGTCACTATAACTCTGGTTCAAGCCCTAGTTGGTTTTGAGAAGACCATTAAACACTTAGATGAGCATCTGGTGGACATAGGCACAAAGGGAATCACAAAGCCAAAGCAAGTAAGGAAGTTCAAAGGGGAAGGCATGCCATTGCATATGAGCACGAAGAAAGGAGATCTTTACGTCACTTTTGAGGTTCTATTTCCCACGTCGCTAACGGAGGAACAGAAAACAAAGATACAAGCAATTCTTGGTTAG 1038 0.4451 MAHRRAKLLFLLCALCYSLNAIAGKSYYDILQVSKGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSEKRGIYDRYGEEGLKQHAASGGRGGGMGMNIQDIFSSFFGGGSMEEEEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVLKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRVRTAPHELFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDIGTKGITKPKQVRKFKGEGMPLHMSTKKGDLYVTFEVLFPTSLTEEQKTKIQAILG. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05521 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 133 252 IPR008971 GO:0006457|GO:0051082
Seca1g05521 345 Gene3D - 251 329 - -
Seca1g05521 345 Pfam DnaJ C terminal domain 139 329 IPR002939 -
Seca1g05521 345 Coils Coil 61 81 - -
Seca1g05521 345 FunFam DnaJ subfamily B member 11 250 345 - -
Seca1g05521 345 Gene3D DnaJ domain 23 128 IPR036869 -
Seca1g05521 345 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 5 344 - -
Seca1g05521 345 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Seca1g05521 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 254 338 IPR008971 GO:0006457|GO:0051082
Seca1g05521 345 CDD DnaJ_C 135 332 - -
Seca1g05521 345 CDD DnaJ 27 80 IPR001623 -
Seca1g05521 345 SMART dnaj_3 25 83 IPR001623 -
Seca1g05521 345 SUPERFAMILY Chaperone J-domain 23 124 IPR036869 -
Seca1g05521 345 FunFam DnaJ protein ERDJ3B 23 129 - -
Seca1g05521 345 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Seca1g05521 345 Pfam DnaJ domain 27 88 IPR001623 -
Seca1g05521 345 Gene3D - 129 250 - -
Seca1g05521 345 PRINTS DnaJ domain signature 46 61 IPR001623 -
Seca1g05521 345 PRINTS DnaJ domain signature 83 102 IPR001623 -
Seca1g05521 345 PRINTS DnaJ domain signature 63 83 IPR001623 -
Seca1g05521 345 PRINTS DnaJ domain signature 28 46 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05521 Seca-Chr1 158904630 158910993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05521 27 90 C2H2 Transcription Factor Family AT1G74250 42.029 1.99e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05521 K09517 - gmx:100807885 623.239