Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05518 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAAGGGAGGTGGACAACAGAGGAAGATGAAATATTGACAAAGTACATTCAGGCCAATGGGGAAGGTTCTTGGAGGTCATTGCCAAAAAATGCAGGATTGCTGAGATGTGGGAAGAGCTGCAGATTAAGATGGATTAACTATTTAAGAGCTGATCTCAAAAGGGGAAATATTTCTGTTGAAGAGGAGAATATCATTGTAAAGTTGCATGCTTCTTTTGGCAACAGTTGCAGGTGGTCTTTGATTGCAAGTCACTTGCCTGGCAGAACAGACAACGAGATAAAAAATCACTGGAACTCACACTTGAGTAGGAAAGTCTACCGCTTCAAAGGATCATCATCAGAAGAAATCATCGTAGATACCCCTCCTAAGCGCAAAGGTAGAACCAGCCGCTGGGCCATGAAGAAGAACAGCAAAAACTACGCCAAAAAGGCTTCTTCTGATCCCACTCCCCAAATTAATAACGTGGAACCTGTTCCTGTTCCTGTTCCACCCACCACCCCTGCACTAGAGAGCGAGAACAACTTGTCTAGTTCTTTCTTGGTAGAGGGAGAAGATCAAAACGGAGGAGGAGGTACTATGTTGACCTGTGACGACGATGGGTTATTGCAGTGTTTTGACGGTGACGTGTCAGCTGGAGCGTGTCAGGAGGTTATTAATGGAGATGACTTGTTCAATTTTGATGAATTCATGGACACATGCTTAGTGGAAGCAAGCGAGATTTTGAGCACCTTTTGCGAAAGCAATGATGTACTAGTAATAAATGATAAAGGGGACACGTGTCATGCAACAAATAATGTGGACCCGGAGAACCACAGCTCGAATATTGAGGAGTTACAAAGTTGTTATTCTTGCTCTTCTAATTCCATGCCATGGCCTTGGGACTTCGATGATGATGATAGCAGCTGGGATTGGGAGAGCGTGTTGCAGTTGAATCAGTTAGAGTACTCATCGGAGCAACATCAAAAACTCCTCAATTGGCTGTGGGAAGATGATGATTGGGAAAACGAGTTTAAGATATTTGGAGAGATTGACCTAATTGAGACACGAAGTCAAAATGAAACTATATGA 1107 0.4345 MGRAPCCEKVGLKKGRWTTEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISVEEENIIVKLHASFGNSCRWSLIASHLPGRTDNEIKNHWNSHLSRKVYRFKGSSSEEIIVDTPPKRKGRTSRWAMKKNSKNYAKKASSDPTPQINNVEPVPVPVPPTTPALESENNLSSSFLVEGEDQNGGGGTMLTCDDDGLLQCFDGDVSAGACQEVINGDDLFNFDEFMDTCLVEASEILSTFCESNDVLVINDKGDTCHATNNVDPENHSSNIEELQSCYSCSSNSMPWPWDFDDDDSSWDWESVLQLNQLEYSSEQHQKLLNWLWEDDDWENEFKIFGEIDLIETRSQNETI. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05518 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 118 IPR017930 -
Seca1g05518 368 ProSiteProfiles Myb-like domain profile. 62 114 IPR001005 -
Seca1g05518 368 CDD SANT 16 61 IPR001005 -
Seca1g05518 368 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 178 - -
Seca1g05518 368 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
Seca1g05518 368 CDD SANT 71 114 IPR001005 -
Seca1g05518 368 MobiDBLite consensus disorder prediction 150 170 - -
Seca1g05518 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca1g05518 368 SMART sant 13 63 IPR001005 -
Seca1g05518 368 SMART sant 66 116 IPR001005 -
Seca1g05518 368 Pfam Myb-like DNA-binding domain 67 114 IPR001005 -
Seca1g05518 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca1g05518 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca1g05518 368 FunFam Myb transcription factor 11 67 - -
Seca1g05518 368 Gene3D - 70 161 - -
Seca1g05518 368 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05518 Seca-Chr1 158880834 158883527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05518 1 151 MYB Transcription Factor Family AT5G49330 65.698 6.05e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g05518 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05518 K09422 - gmx:100817316 307.375