LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g05516	ATGCAGATGGAAAACTCTAATGATGTTGTGATTGGTAGTTTAGATGATGATATAGAGACTTATTGTGTCGTTAGTTCTGATGATAGTGCAAGTGATGAGGCTCATAATGATAATGATTCTAATAGTGTTAGTGACAGTGATAGTCAGAGTGGTAAATTTAAAAGAATAGATGAATTGACTAAGGAAGATGTTATGGGGCTACATTTTGGTAGTGAAAAAGAAGCTGGTGATTTTTATGAGACGTATTCTAAGAGTTATGGTTTTGCTGTAAGGAAAGATGATGTAAAGAAGGATGCTAGGGGCCAGGTTCGAATGCGCCAATTTGTTTGCAACAAGGAGGGTGTAAGGAACAAAAAACATTTGATGTGGGTTGATAGAAAAAGGGAACATAGACCATTGACTCGTACATCATGTCATGCTAAACTTCGTGTGCACTACGATCTTAGGACAAATAAATGGAAAGTGGTCTCATTTGTGCAGAATCATAACCACGAACTATGCCCATCAAAATTTAGGCACCTGATTAGCACACATCGATTTATTCCGGATGCAGACAAAGCTCAAATTGATAGCTTGCATGCACATGGTGTAAGAACCTGCCACATAATGGGTTATTTGGTAGCTCAAAGAGGGGGATATGGTAATCTGAGTTTTATGAGAAAGGATGTGTATAATTATCTTGATAGCAAAAATCGTATTCGGATTAAAGGTGGGGATGCTCGCGCTGCATTAAGTTATCTTCAAGGAAAATCAAATAGTGACCCTGTGCTATTTTGCAAGTACACAATTGATGAGAAAAATAGATTGAAGACAATATTTTGGGCAGATGGTGCTTGTGTTTCTGACTATTTATGCTTCAGTGATGTTATTGCCTTTGACACCACTTATAAGAAGAATAAATACCATCATCCTTTGGTTATTTTCTCTGGGTGTAATTACCATTCACAAATTGTTATTTTTGGGTTTGCATTGGTTCCAGATGAAACAATTGAGACATACAAGTGGGTCCTCGAGGCTTTTTTGCAGGCAATGTTCTACAAACACCCAAAATCTGTTGTGACAGATGGAGATGGAGCGATGAGAGAGGTCATTAAGCAAGTGTTTCCCAATGCATCACACAGATTGTGTGCTTGGCACTTGTAG	1143	0.3806	MQMENSNDVVIGSLDDDIETYCVVSSDDSASDEAHNDNDSNSVSDSDSQSGKFKRIDELTKEDVMGLHFGSEKEAGDFYETYSKSYGFAVRKDDVKKDARGQVRMRQFVCNKEGVRNKKHLMWVDRKREHRPLTRTSCHAKLRVHYDLRTNKWKVVSFVQNHNHELCPSKFRHLISTHRFIPDADKAQIDSLHAHGVRTCHIMGYLVAQRGGYGNLSFMRKDVYNYLDSKNRIRIKGGDARAALSYLQGKSNSDPVLFCKYTIDEKNRLKTIFWADGACVSDYLCFSDVIAFDTTYKKNKYHHPLVIFSGCNYHSQIVIFGFALVPDETIETYKWVLEAFLQAMFYKHPKSVVTDGDGAMREVIKQVFPNASHRLCAWHL.	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g05516	380	Pfam	FAR1 DNA-binding domain	77	167	IPR004330	-
	Seca1g05516	380	Pfam	MULE transposase domain	289	380	IPR018289	-
	Seca1g05516	380	PANTHER	OS01G0519700 PROTEIN	57	380	-	-
	Seca1g05516	380	MobiDBLite	consensus disorder prediction	27	52	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g05516	Seca-Chr1	158852879	158854116	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca1g05516		MULE	4.4e-26	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g05516	-		-	ccaj:109792835	459.144