Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05514 ATGAAGATAGACAAATGCCCTCATAATTTTCATCCTAGTTGCATGTATAAGTGGGTGGAGAGTAGTGAAAACTGTCCAGTTTGTGGGAAGGTAATATTTACTTGA 105 0.3714 MKIDKCPHNFHPSCMYKWVESSENCPVCGKVIFT. 35
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05514 34 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 34 IPR013083 -
Seca1g05514 34 SUPERFAMILY RING/U-box 4 33 - -
Seca1g05514 34 Pfam RING-H2 zinc finger domain 4 28 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05514 Seca-Chr1 158847208 158847312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05514 3 32 C3H Transcription Factor Family AT5G15790 66.667 1.35e-10 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05514 - - ath:AT3G02290 55.8398