Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05510 ATGTCAGATTATATTCACAGCTCAACACCAAAATTATTTGGTTTCCCACTAACAGAGCAGGACGAATTTCCAGAAAGGAAATACGATGTTGAAGAGGACAGGAAATTCAGGTGCCAATATTGCAAGCGAGTATTCGCTAACTCCCAGGCCTTAGGGGGTCACCAAAATGCTCACAAGAAAGAACGCCAGAGAGCAAGGCGTTTCCAAATCCAGAATGACCATAGCCATAGCCAAAGGCGCTCTATACCCTCTGCACAAGTAACACTTCTACCCTCAAGTATTTACTTACAAGCCTCTGCTGCCAATAATCATGTACCCACTTTTCATCCTCATCAACAATTGCTAAAGCACTTCCCATCAGGGCCCATTTTGATTCCTTCTTCAACTCCTTTTCAGCTTTATGTCTCACCCACTCAAACTCAACTGCAATCTCCTCCTCCTATTGTCACTCAATTTTCTCCGGAGAGGAATGTTGATGTCCATCTCAAATTGTCTCTCTCAAATTGA 507 0.432 MSDYIHSSTPKLFGFPLTEQDEFPERKYDVEEDRKFRCQYCKRVFANSQALGGHQNAHKKERQRARRFQIQNDHSHSQRRSIPSAQVTLLPSSIYLQASAANNHVPTFHPHQQLLKHFPSGPILIPSSTPFQLYVSPTQTQLQSPPPIVTQFSPERNVDVHLKLSLSN. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05510 168 Gene3D Classic Zinc Finger 22 90 - -
Seca1g05510 168 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Seca1g05510 168 PANTHER ZINC FINGER PROTEIN 5 7 166 IPR044299 GO:0010090
Seca1g05510 168 Pfam C2H2-type zinc finger 36 61 - -
Seca1g05510 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Seca1g05510 168 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
Seca1g05510 168 FunFam Zinc finger protein 6 24 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05510 Seca-Chr1 158826607 158827113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05510 7 70 C2H2 Transcription Factor Family AT1G67030 50.704 1.02e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g05510 zf-C2H2_6 4.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05510 - - aprc:113861015 179.874