Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05505 ATGGCGACGAGAAATCGAACTCTACAGTTCAGGAAGCACAGGGACGCTGTGAAGAGCGTACGTGCTCCTCTCTCTTCATCAGCATCTGCTTCCGGTGGTCCTGTCATTGAAATGGTGAACACTTCGCTTCTTCGTTCCAATAATCGATCTTCCTACACCCCTCTAAGCACCCACGATCCAGGTCCAGCCACCTCAAGTGATGCATTTACTGTGGGCTTGCCGCCATCTTGGGTTGATGATTCGGAAGAAATAGCTACAAACATACAACGTGCTAAGATTAAAATGTCTGAGTTAACCAAAGCTCATGCAAAGGCTTTAATGCCCTCCTTTGGTGATGGCAAAGATGATCAGCGTCAGATTGAGACTCTCACCCGGGAAATTACGGATCTCCTCAGAAAGTCTGAAATGAGGCTGAAAAGACTTTCTGCTGCCATGGGATCTTCTGAGGATTCTAATGTTAGAAAAAATGTGCAGCGTTCGCTTGCTACAGACCTTCAGAACCTGTCATTAGACCTCCGGCGAAAGCAGTCAGCATATTTGAAACATTTGCAGCAGCAAAAAGAGGGTTATGATGGAATTGACTTGGAGATGAACTTTAATGGGAGTAAATCTGGACTGCAGGATGATGGATTCAGTGATGTGGGCTTTAGTGGAGAGCAAATGACAAAGCTAAAGAAAAGTGAGCAGCTCTCAGAGGAAAGGGAAAGAGAGATTGAACAGGTTGTTAAATCAGTCAACGAACTTGCTCAGATCATGAAGGATCTCTCTGTTCTTGTGATAGATCAGGGAACAATTGTTGATAGAATTGACTACAACATTCAGAATGTTGCTACTTCCGTAGAAGAGGGTTTAAAGCAGTTGCAAAAGGTTCTGTTTTCTCTTACCCTCTTATTTACTTGCACAGAGACTCCGCTTTGTCTTTACACGCAAATTGGAGCTTTTATCGAGTTTTCTTTTGGAATTGTTTGGCTGCTGTTATCATCATCTTAA 990 0.4354 MATRNRTLQFRKHRDAVKSVRAPLSSSASASGGPVIEMVNTSLLRSNNRSSYTPLSTHDPGPATSSDAFTVGLPPSWVDDSEEIATNIQRAKIKMSELTKAHAKALMPSFGDGKDDQRQIETLTREITDLLRKSEMRLKRLSAAMGSSEDSNVRKNVQRSLATDLQNLSLDLRRKQSAYLKHLQQQKEGYDGIDLEMNFNGSKSGLQDDGFSDVGFSGEQMTKLKKSEQLSEEREREIEQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATSVEEGLKQLQKVLFSLTLLFTCTETPLCLYTQIGAFIEFSFGIVWLLLSSS. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05505 329 MobiDBLite consensus disorder prediction 49 64 - -
Seca1g05505 329 Gene3D - 74 282 - -
Seca1g05505 329 PANTHER SYNTAXIN 79 289 IPR045242 -
Seca1g05505 329 CDD SNARE_syntaxin16 232 289 - -
Seca1g05505 329 MobiDBLite consensus disorder prediction 49 70 - -
Seca1g05505 329 FunFam Syntaxin-43 74 282 - -
Seca1g05505 329 SUPERFAMILY t-snare proteins 73 283 IPR010989 GO:0016020|GO:0016192
Seca1g05505 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Seca1g05505 329 SMART tSNARE_6 223 290 IPR000727 -
Seca1g05505 329 Pfam SNARE domain 264 291 IPR000727 -
Seca1g05505 329 SMART SynN_4 68 184 IPR006011 GO:0016020
Seca1g05505 329 ProSitePatterns Syntaxin / epimorphin family signature. 234 273 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05505 Seca-Chr1 158753649 158759782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05505 1 289 SNARE and Associated Proteins AT4G02195 69.416 1.27e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05505 K08489 - gmx:100803629 440.269