Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05502 ATGACCGCCGATACTCCTAATATCAATCCCAAGGGTCTTCTCTGTAATGCTGCCGCCGGTGCATCCGCCGGAGTTATTGCTGCTACATTTGTGTGTCCTTTAGATGTTATCAAAACTAGGTTTCAGGTTCATGGTGTACCGCAGCTCGCTAATGGAAATGTTAAAGGCAGCTTAATAGTTTCTAGTTTGGAACAAATATTTCACAAGGAGGGGTTACGGGGCATGTACCGTGGACTGTCTCCCACTGTGCTGGCTTTGCTTCCGAACTGGGCGGTTTATTTCACTATGTATGAGCAGCTCAAGAGCCTTCTTCATTCTGATGATGAAAGCCACCATCTTTCAGTTGGAGCTCATATGGTAGCTGCTTCTGGTGCTGGAGCTGCAACTACCATGTTTACAAATCCACTTTGGGTTGTCAAGACTAGATTTCAAACCCAGGGAATGAGACCGGGTGTTGTGCCATATAGGGGCACACTATCTGCATTGAGAAGAATTGCACGTGAGGAGGGTATACGGGGCCTGTACAGTGGCCTTGTACCTGCTCTGGCTGGTATCAGTCATGTTGCCATCCAATTTCCAACGTATGAGAAAATAAAATTTCATCTGGCAAATCAAGATGACACAGCAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCCTCATCAGTTTCCAAAATTTTTGCATCCACGATGACATATCCTCATGAGGTTGTACGTTCCAGACTGCAAGAACAAGGGCACCACTCAGAGAAACGGTACTCTGGTGTCGTCGACTGTATTACAAAAGTTTTTCAACAAGAAGGTGTAGCTGGTTTTTACCGAGGGTGTGCCACCAACCTTCTGAGGACAACACCAGCTGCTGTAATCACATTCACCAGCTTTGAAATGATACACCGTTTTCTTGTTTCACTTTTTCCTTCGGATCCACATCCTCATATTTTGTGA 948 0.4536 MTADTPNINPKGLLCNAAAGASAGVIAATFVCPLDVIKTRFQVHGVPQLANGNVKGSLIVSSLEQIFHKEGLRGMYRGLSPTVLALLPNWAVYFTMYEQLKSLLHSDDESHHLSVGAHMVAASGAGAATTMFTNPLWVVKTRFQTQGMRPGVVPYRGTLSALRRIAREEGIRGLYSGLVPALAGISHVAIQFPTYEKIKFHLANQDDTAMDKLGARDVAIASSVSKIFASTMTYPHEVVRSRLQEQGHHSEKRYSGVVDCITKVFQQEGVAGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPSDPHPHIL. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05502 315 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 109 - -
Seca1g05502 315 SUPERFAMILY Mitochondrial carrier 12 297 IPR023395 -
Seca1g05502 315 Gene3D Mitochondrial carrier domain 3 107 IPR023395 -
Seca1g05502 315 Gene3D Mitochondrial carrier domain 108 305 IPR023395 -
Seca1g05502 315 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Seca1g05502 315 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Seca1g05502 315 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Seca1g05502 315 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Seca1g05502 315 PRINTS Mitochondrial carrier protein signature 78 98 IPR002067 GO:0055085
Seca1g05502 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Seca1g05502 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 301 IPR018108 -
Seca1g05502 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 14 305 IPR044712 GO:0006862|GO:0055085
Seca1g05502 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 103 IPR018108 -
Seca1g05502 315 Pfam Mitochondrial carrier protein 219 303 IPR018108 -
Seca1g05502 315 Pfam Mitochondrial carrier protein 112 204 IPR018108 -
Seca1g05502 315 Pfam Mitochondrial carrier protein 12 106 IPR018108 -
Seca1g05502 315 FunFam NAD+ transporter 110 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05502 Seca-Chr1 158732123 158737733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05502 1 309 Chloroplast and Mitochondria Gene Families AT2G47490 76.699 1.49e-164 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05502 K15115 - gmx:100500213 568.155