Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05501 ATGGCGGCAGAGGCCGCATTGTCCTTTTCTGTGGCATCGGTTGTGGAGGATGTGCTTCAACAACACGGCCCTCGCCTCAAAGATCTTGATTTGCAATCTAGGAAAGCTGAAGAAGCTGCATCAAGAAGGTATGAAGCAGCAGGGTGGCTTAGAAAAATGGTTGGAGTTGTTGCAGCTAAAGATTTACCAGAAGAGCCCTCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATTATCCTTTGTAATGTTATTAATAAGGTCCAATCTGGAGCTGTGCCTAAGGTTGTGGAGAGTCCTGTTGATTCTGCTCTGATCCCTGATGGGGCACCGTTATCCGCATATCAATATTTTGAAAACGTGAGGAATTTCTTGGTGGCTGTCCAAGAAATTGGACTTCCTACATTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCATCCAGGATTGTGAACTGCGTCTTGGCCCTTAAATCCTATAGTGAATGGAAACAGAATGGGGCAAATGGTGCCTGGAAATTTGGTGGAACTCTCAAACCTACTATCTCTGCAAAATCTTTTGTGAGAAAAAACTCAGAGCCATTTACTAACTCCTTGTCAAGGACTTCATCAATCAATGAAAAATCTCTGGCTACTCTTAACTCTGACGTTGAGTCTAATAAAATGTCTGGTTCCCATTCTTTGAGTATGCTTATTCATTCAATTTTATCAGATAAGAAGCCAGAAGAAATTCCAATGTTGGTTGAATCTGTTTTGAACAAGGTTGTAGAGGAGTTTGAGCATCGTATTGCAAGCCAAGGTGAACAGACAAAAATAACTTCAAGAGATTCTGTTCCTGAAAGCAACGGATCTGTATCAAAGTTTGTTATGGCAGATAAAAAGACTCATATGGTAACAAAGAAAGAGGATTACATTCAAAAAAACCGTGTTGCTGCTGAGGAATTGCAAAGCCACCTTCTGAAGCAGCAGACACTCTTTGATCAACAACAAAGAGATGTTCAAGTACAGAATCAGAGATTAGATTCACCATTTTTAATCTTTGAGAATTTTCTATTTTCACTGCATTACACAAAATCTGGTATGCAGTTAATGCAAAAGAAATTGCAGGAGGAGTTTTCCAATCTTGGCATGCACATTCATGGCTTAGCTCATGCTGCTTCTGGATATCATAGAGTTCTTGAAGAAAATCGCAAACTATACAATGAAGTACAGGATCTTAAGGGAAGTATTAGGGTGTATTGTCGAGTAAGACCCTTCTTTCCTGGACAAGCAAACCAATTGAGCACAGTAGAAAATATAGAAGATGGAACTATCACAATTAATGTTCCTTCAAAGAATGGGAAGGGACGCAGATCCTTCAACTTCAACAAAGTCTTTGGACCATCTGCAACCCAAGCGGAGGTCTTCTTTGATATGCAGCCACTTATTAGGTCTGTTCTTGATGGTTATAATGTTTGCATATTTGCATATGGCCAAACAGGATCAGGAAAAACTCACACCATGACTGGACCTAAAGAGATCACAGAGAAAAGCCAAGGTGTAAATTACAGGGCTCTAGGCGATTTGTTTCTTATAGCAGATCAAAGAAAGGACACATTCCACTATGATGTTTCTGTTCAAATGATTGAAATATATAATGAGCAAGTCAGGGATCTACTGGTCACTGATGGAACAAACAAAAGATTAGAAATTCGTAGCAGTTCTCACAAAGGGCTCAGCGTGCCAGATGCAAGCCTTGTCCCTGTGTCATCAACTCTTGATGTTATTGAACTAATGAACCTTGGGCAAAGGAACCGAGCTGTTGGAGCAACAGCCCTTAATGACCGAAGTAGCCGATCTCATAGTTGCTTGACTGTTCATGTTCAAGGAAGAGATTTGACATCTGGAGCTGTCATTCGTGGATGCATGCATTTGGTTGACTTGGCAGGAAGTGAGAGAGTGGATAAATCTGAGGCCACAGGAGATAGACTGAAAGAGGCACAACATATTAACAAATCTCTTTCAGCTTTGGGTGATGTCATTGCTTCCCTTGCTCAGAAAAACTCACACGTTCCTTATAGAAATAGTAAACTCACACAATTACTCCAAGATTCACTTGGAGGACAGGCTAAGACACTAATGTTTGTTCACATAAGTCCAGAGACTGATGCTATTGGAGAAACAATTAGCACCTTAAAATTTGCAGAAAGAGTTGCTACAGTTGAACTTGGTGCTGCCCGAGTAAACAAAGATAGTGCAGATGTTAAGGAGCTCAAAGAACAGATCGCAAACCTTAAGGCCGCACTGGCAAGAAAAGAAGGGGAATCAGAACATTCTTTATCTAGCAGCTCTGACAAATACAGAACAAAGGCTAGCAACCTATCACCTTATCATATAAACCAGCAGGTTGCAGACACTAGAGATCCACTTGGATGCCGGCGACCAATGGTTGAAGTTGGCAACATAGATCAGCTTCAGAGTAATACAACATTGAGGCACAAAACTCAGAGCTTTGATTTTGATGAGATATCAGCAAATTCACCACCATGGCCCCCAGTGAATAATGTTGGACAAAACTATGGGGAGGATGACAAAGAAACAGGTTCTGGAGAATGGGTTGATAAAGTAATGGTAAACAAAACTGAGAACCTCTTGGGGTGTTGGCAAGCAAGCAATGGGAACTTATCAGAGGCCTTTTATCAGAAATATCTCCAAGATTCTTCCAAAATGTACTCAGAACAGTTTAACATTGCGGGTTCAGATGACATGGATGAGCTTGATGCTGCAACCAGTGATTCCTCCGAACCTGACTTGCTTTGGCAATTTAATCATTCCAAACTCACCAATGGAATGGGATCAAAGACTATGAAACCTGTCTCAAAGGCAGCAAAAAGCCCAGATTTGAGGAGGAATGCTGTTCATTCTCCTCTTGGTCCTTCACCTTCGTTGAAGCAACAATCAAATGGTGTCTCACATCGAACAGGAAGGCATCCAGCTTCGGTTGATGTGAAACGTAAAACTGGGAGCAGAAAATAA 3015 0.4133 MAAEAALSFSVASVVEDVLQQHGPRLKDLDLQSRKAEEAASRRYEAAGWLRKMVGVVAAKDLPEEPSEEEFRLGLRSGIILCNVINKVQSGAVPKVVESPVDSALIPDGAPLSAYQYFENVRNFLVAVQEIGLPTFEASDLEQGGKSSRIVNCVLALKSYSEWKQNGANGAWKFGGTLKPTISAKSFVRKNSEPFTNSLSRTSSINEKSLATLNSDVESNKMSGSHSLSMLIHSILSDKKPEEIPMLVESVLNKVVEEFEHRIASQGEQTKITSRDSVPESNGSVSKFVMADKKTHMVTKKEDYIQKNRVAAEELQSHLLKQQTLFDQQQRDVQVQNQRLDSPFLIFENFLFSLHYTKSGMQLMQKKLQEEFSNLGMHIHGLAHAASGYHRVLEENRKLYNEVQDLKGSIRVYCRVRPFFPGQANQLSTVENIEDGTITINVPSKNGKGRRSFNFNKVFGPSATQAEVFFDMQPLIRSVLDGYNVCIFAYGQTGSGKTHTMTGPKEITEKSQGVNYRALGDLFLIADQRKDTFHYDVSVQMIEIYNEQVRDLLVTDGTNKRLEIRSSSHKGLSVPDASLVPVSSTLDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAVIRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPETDAIGETISTLKFAERVATVELGAARVNKDSADVKELKEQIANLKAALARKEGESEHSLSSSSDKYRTKASNLSPYHINQQVADTRDPLGCRRPMVEVGNIDQLQSNTTLRHKTQSFDFDEISANSPPWPPVNNVGQNYGEDDKETGSGEWVDKVMVNKTENLLGCWQASNGNLSEAFYQKYLQDSSKMYSEQFNIAGSDDMDELDAATSDSSEPDLLWQFNHSKLTNGMGSKTMKPVSKAAKSPDLRRNAVHSPLGPSPSLKQQSNGVSHRTGRHPASVDVKRKTGSRK. 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05501 1004 ProSiteProfiles Kinesin motor domain profile. 409 734 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g05501 1004 FunFam Kinesin-like protein KIN-14I isoform A 404 776 - -
Seca1g05501 1004 Pfam Calponin homology (CH) domain 41 162 IPR001715 GO:0005515
Seca1g05501 1004 CDD KISc_C_terminal 407 736 - -
Seca1g05501 1004 MobiDBLite consensus disorder prediction 940 1004 - -
Seca1g05501 1004 SMART kinesin_4 407 742 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g05501 1004 MobiDBLite consensus disorder prediction 990 1004 - -
Seca1g05501 1004 FunFam Kinesin-like protein KIN-14I isoform A 27 179 - -
Seca1g05501 1004 Gene3D - 27 186 IPR036872 -
Seca1g05501 1004 SMART ch_5 42 160 IPR001715 GO:0005515
Seca1g05501 1004 PRINTS Kinesin heavy chain signature 482 503 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g05501 1004 PRINTS Kinesin heavy chain signature 604 621 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g05501 1004 PRINTS Kinesin heavy chain signature 684 705 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g05501 1004 PRINTS Kinesin heavy chain signature 635 653 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g05501 1004 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Seca1g05501 1004 CDD CH_AtKIN14-like 42 159 - -
Seca1g05501 1004 Gene3D Kinesin motor domain 404 776 IPR036961 -
Seca1g05501 1004 SUPERFAMILY Calponin-homology domain, CH-domain 38 172 IPR036872 -
Seca1g05501 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 767 IPR027417 -
Seca1g05501 1004 Coils Coil 741 768 - -
Seca1g05501 1004 MobiDBLite consensus disorder prediction 971 987 - -
Seca1g05501 1004 Pfam Kinesin motor domain 415 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g05501 1004 PANTHER KINESIN-LIKE PROTEIN KLP-3 47 899 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05501 Seca-Chr1 158714369 158721551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05501 243 781 Calmodulin-binding Proteins AT5G65930 34.664 1.23e-79 281