Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05500 ATGTCCAGCGTCATTGATTCTAACGGTGCCGTTTGTTATTATTCAGTGCTTGGCATTTGCAAACATTCCACCGATGACGAAATCCGTTGCGCTTATCGTAAGATGGCTCTGAAGTGGCATCCTGACCGGTGGATCAAGGACCCAAAGCTTGCACTAGAAGCCAAAAAGCGGTTTCAGCATATTCAAGAGGCTTATTCAGTTTTGTCCAATAAAAGGAAGAGAAGGATTTATGATGCTGGCTTGTTTGGTCTCATTGGAGAGGACGATGATGAGGTGGATTCATATATACATATGATTTCATTAATTATCATATAA 315 0.4127 MSSVIDSNGAVCYYSVLGICKHSTDDEIRCAYRKMALKWHPDRWIKDPKLALEAKKRFQHIQEAYSVLSNKRKRRIYDAGLFGLIGEDDDEVDSYIHMISLIII. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05500 104 SMART dnaj_3 11 73 IPR001623 -
Seca1g05500 104 Pfam DnaJ domain 13 78 IPR001623 -
Seca1g05500 104 Gene3D DnaJ domain 4 97 IPR036869 -
Seca1g05500 104 SUPERFAMILY Chaperone J-domain 9 82 IPR036869 -
Seca1g05500 104 PRINTS DnaJ domain signature 14 32 IPR001623 -
Seca1g05500 104 PRINTS DnaJ domain signature 53 73 IPR001623 -
Seca1g05500 104 PRINTS DnaJ domain signature 32 47 IPR001623 -
Seca1g05500 104 PANTHER PUTATIVE, EXPRESSED-RELATED 9 100 - -
Seca1g05500 104 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Seca1g05500 104 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Seca1g05500 104 CDD DnaJ 12 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05500 Seca-Chr1 158712337 158713163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05500 12 79 C2H2 Transcription Factor Family AT1G74250 47.826 4.87e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05500 - - gmx:100794942 166.392