Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05496 ATGGTCTCACTGAAGCTGCAAAAACGGCTCGCCGCCAGTGTCCTCAAGTGCGGAAGAGGCAAAGTTTGGCTCGATCCCAATGAAGGCAATGAAATCTCCATGGCCAATTCTCGGCAAAACATAAGGAAGTTGGTTAAGGATGGGTTTATCATCAGGAAACCTACCAAGATTCACTCCCGCTCACGTGCTCGTCGAATGAAGGAAGCCAAGAGGAAAGGACGACACTCTGGATATGGTAAGCGTAAGGGTACTAGGGAGGCAAGGCTTCCCACAAAAATCCTGTGGATGAGGAGAATGCGTGTACTCAGACGCCTGCTTCGTAAGTACAGGGAATCTAAGAAGATTGACAAGCACATGTACCATGACATGTATATGAAGGTTAAGGGTAATGTCTTCAAGAACAAGAGAGTTCTAATGGAGAGCATACACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACCTTGTCTGACCAGTTTGAGGCCAAGCGTGCCAAGAACAAGGCCAGCAGAGAAAGGAAAATTGCTCGTAGGGAGGAGCGTCTGGCCCAAGTAAGTTCCATGCTGTCTTGA 570 0.4825 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQVSSMLS. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05496 189 FunFam Ribosomal protein L19 57 188 - -
Seca1g05496 189 Gene3D - 57 188 - -
Seca1g05496 189 MobiDBLite consensus disorder prediction 149 189 - -
Seca1g05496 189 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Seca1g05496 189 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca1g05496 189 MobiDBLite consensus disorder prediction 149 180 - -
Seca1g05496 189 MobiDBLite consensus disorder prediction 57 85 - -
Seca1g05496 189 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Seca1g05496 189 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca1g05496 189 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Seca1g05496 189 FunFam Ribosomal protein L19 1 56 - -
Seca1g05496 189 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Seca1g05496 189 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca1g05496 189 MobiDBLite consensus disorder prediction 57 79 - -
Seca1g05496 189 PANTHER 60S RIBOSOMAL PROTEIN L19 1 185 IPR039547 GO:0003723|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05496 Seca-Chr1 158699103 158700432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05496 1 183 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 91.257 2.23e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05496 K02885 - rcu:8278777 349.362