Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05495 ATGTGTGGTGGTGCTATCATAGCTGAGTTCATACCCCGCAATCGATCTCGCCGTCTCACCGCTTCAGAACTATGGCCTAATACATTTGGCAAACACAATGATGAATCACAGTTCGATTATTCCCAACCTGATCAGGAGCAGGACCATCAACAATCACCACCCCATCTCAAAAGGTCCCAACTTTCCCCGGGTCAGTCACTTTCTCATACAGTGGACGAACAAGTTGAGAAGCCAGTGAAGAGGCAGAGGAAAAACCTCTACAGAGGGATTAGGCAGAGGCCATGGGGCAAATGGGCTGCTGAGATTCGTGATCCAAGAAAAGGGGTTCGTGTTTGGCTTGGTACTTTTAACACTGCTGAAGAAGCTGCAAGAGCTTATGACAGAGAAGCTAGAAAAATCCGTGGCAAAAAAGCCAAAGTCAATTTCCCAAATGAGGATGATCAATTCTCCATTCAACCTCGTTCTGTTCCTATTCCAACCCCTCCACTTCGACGCCAGGGTCTTCCTCCTCTGTATCAACAACAACAACCATATAGTTGCAATTTGAACCCTAAAAGTCTGAACTTGGAGTTCGGTTATGATCTGAATCAAGAAGGGACATTTCCTTCTCATGGTGGTGGCATAAACGGGGATCCAGTTTTTGGTTCTGTGGATGAGAGTTGCGGATATGGATCTGCATCTGGGTCAGAGGGTGCTTATTCAACAACAGAGTTCATGAGTTCGAATAATTTTGGTGGTGAAGAGAAAGTGGTGAATGAGGAAGCACAAGGGGTTGGAAGTGAAGAAACAAAGAACCAAGTGGAGAAGCTTTCGGAGGAGCTTATGGCTTATGAGAATTACATGAGGTTTTATCAAATTCCTTATTATGATGGCCAATCTGTTGCACCTAATACGACTGTTCAGGAAAGTGTGGTGGGAGATCTCTGGGCCTTTGATGCTGAGGCTGTTCCTTCTTCATCAACCCTGTGA 969 0.4551 MCGGAIIAEFIPRNRSRRLTASELWPNTFGKHNDESQFDYSQPDQEQDHQQSPPHLKRSQLSPGQSLSHTVDEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDQFSIQPRSVPIPTPPLRRQGLPPLYQQQQPYSCNLNPKSLNLEFGYDLNQEGTFPSHGGGINGDPVFGSVDESCGYGSASGSEGAYSTTEFMSSNNFGGEEKVVNEEAQGVGSEETKNQVEKLSEELMAYENYMRFYQIPYYDGQSVAPNTTVQESVVGDLWAFDAEAVPSSSTL. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05495 322 Coils Coil 260 280 - -
Seca1g05495 322 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Seca1g05495 322 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Seca1g05495 322 CDD AP2 87 144 IPR001471 GO:0003700|GO:0006355
Seca1g05495 322 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Seca1g05495 322 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Seca1g05495 322 MobiDBLite consensus disorder prediction 26 85 - -
Seca1g05495 322 PANTHER DNA-BINDING DOMAIN 48 241 IPR044808 GO:0003700|GO:0009873
Seca1g05495 322 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Seca1g05495 322 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Seca1g05495 322 MobiDBLite consensus disorder prediction 43 72 - -
Seca1g05495 322 Gene3D AP2/ERF domain 86 144 IPR036955 GO:0003700|GO:0006355
Seca1g05495 322 Pfam AP2 domain 87 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05495 Seca-Chr1 158689957 158691015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05495 1 144 AP2-EREBP Transcription Factor Family AT3G16770 51.974 6.47e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g05495 AP2 9.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05495 K09286 - gmx:100780763 364.77