Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05490 ATGGGAAGAAAAACAGCACCTTTGCTGGCTCTTATACCCATTCTCACTGTGTTCTTTTTGCTACTAACCCATTTCAGTAGCATCACAAAATTAGCAACAAAACCACCCCAACCAACACACCTCCATTTCCAAAAACACATCCAAGTAGCCCACTCTGCATGCGAAGGAACACTCTACCCTGACCTATGTGTCTCCACCCTTGCCTCCTTCCCAGATCTCACCTCCAAATCTGTCCCACAAATGATCTCCTCTGTCATCAACCACACCATAGATGAGGTGAAATTGTCATCCTACAATTGCAGTGGCTTTCGAAATAGGCTTCGAAGTCTAAGCTCACTTGAGCAGAGAGCTCTTGATGACTGTCTCAATTTATTTGATGACACCACTCTAGAGCTCAAAACAGCAATTGCTGATCTCTCTCAAACCGTAATTGGCTCCAAACGGTACCATCACTTGCAGACTCTGCTAAGTGGCGCAATGACCAATGTGTACACGTGTCTCGATGGTTTTGCTTATTGTAAAGGGAATTTGAGAAACAGAATTCAGGATGAGTTGTTTGAGATTTGTCATCAAGTTAGTAACTCACTTGCTATGCTCAAGAAAGTTCCTGGAGTGAAGAAATCATCCAAGTCTGAGGCATTTCCTGAATATGGTAAGTTGGAAAAAGGGTTCCCATCGTGGATATCCCCCAAAGACCGAAAGCTACTACAAGCTCCTGTGAATGAGACCAAGTTCGATCTTGTTGTGGCTAAAGATGGAACTGGAAACTTCACCACTGTAGGGGAAGCATTGGCTGCGGCTCCAAACTCAAGCACAACTAGGTTTGTGATATACATAAAAGCGGGGGCATATTTTGAGAACGTGGAGGTGATAAGGAAGAAGACGAATCTGATGATGGTGGGAGATGGAATTGGAAAGACGGTTGTGAAGGCCAGTAGAAATGTTGTGGATGGATGGACCACTTTCCAATCAGCTACTTTTGCTGTAGTAGGAGACAAATTCATAGCAAAGGGCATAACATTTGAGAACTCAGCTGGGCCAAGCAAACACCAAGCTGTGGCCCTGAGAAGTGGTGCTGACTTCTCAGCCTTTTACCAATGCAGCTTTGTTGCTTACCAAGACACTCTCTATGTCCACTCCCTCCGTCAATTCTACCGTGAATGTGACATTTATGGAACCATAGACTTCATATTTGGTAATGCAGCAGTGGTTTTCCAAAACTGCAACTTGTACGCACGAAAGCCTAATCCAAATCAGAAAAACTTGTTCACTGCTCAAGGCAGAGAAGACCCTAACCAAAACACTGGCATTTCCATCTTGAATTGCAAGGTTGCAGCTGCTGCAGATTTAATCCCAGTCAAATCATCGTTCAAGACTTACTTGGGTCGCCCTTGGAAGAAATATTCAAGAACTGTTTATCTAAATTCTTTCATGGAGGATTTGATAGACCCTGCAGGGTGGTTGGAATGGAATGGCACATTTGCATTGGACACTCTGTATTATGGAGGGTACAAAAACAGGGGTCCAGGTTCTAATACAAGTGCTAGAGTTACATGGCCAGGTTATAGAGTCATTAATAGCTCCACTGAAGCAAGCCAATTCACAGTTAGAGAATTCATACAAGGGAATGAATGGTTGAACTCCACTGGTATTCCATTCTTCCCTGATTTGAGTTGA 1677 0.4365 MGRKTAPLLALIPILTVFFLLLTHFSSITKLATKPPQPTHLHFQKHIQVAHSACEGTLYPDLCVSTLASFPDLTSKSVPQMISSVINHTIDEVKLSSYNCSGFRNRLRSLSSLEQRALDDCLNLFDDTTLELKTAIADLSQTVIGSKRYHHLQTLLSGAMTNVYTCLDGFAYCKGNLRNRIQDELFEICHQVSNSLAMLKKVPGVKKSSKSEAFPEYGKLEKGFPSWISPKDRKLLQAPVNETKFDLVVAKDGTGNFTTVGEALAAAPNSSTTRFVIYIKAGAYFENVEVIRKKTNLMMVGDGIGKTVVKASRNVVDGWTTFQSATFAVVGDKFIAKGITFENSAGPSKHQAVALRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNPNQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSSFKTYLGRPWKKYSRTVYLNSFMEDLIDPAGWLEWNGTFALDTLYYGGYKNRGPGSNTSARVTWPGYRVINSSTEASQFTVREFIQGNEWLNSTGIPFFPDLS. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05490 558 FunFam Pectinesterase 240 557 - -
Seca1g05490 558 Gene3D - 240 557 IPR012334 -
Seca1g05490 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 204 IPR035513 -
Seca1g05490 558 SMART PMEI_2 45 198 IPR006501 GO:0004857
Seca1g05490 558 SUPERFAMILY Pectin lyase-like 244 555 IPR011050 -
Seca1g05490 558 Pfam Pectinesterase 246 543 IPR000070 GO:0030599|GO:0042545
Seca1g05490 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 202 IPR035513 -
Seca1g05490 558 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Seca1g05490 558 PANTHER PECTINESTERASE 22 547 - -
Seca1g05490 558 NCBIfam pectinesterase inhibitor domain 18 201 IPR006501 GO:0004857
Seca1g05490 558 CDD PMEI-like_3 52 204 - -
Seca1g05490 558 Pfam Plant invertase/pectin methylesterase inhibitor 51 198 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05490 Seca-Chr1 158628319 158634793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05490 74 557 Carbohydrate Esterase AT4G02320 56.338 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05490 K01051 - gmx:100802881 885.56