Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05489 ATGACCCTCAACAACTTGTCCATACTCACCCTCTCTGTTCTCCTTTTACTTTCCATAGCTGAAAAGTACCATGCAGCAGCACCTATTTTTACCCCAAGAACCATTTGCAACTCCACCACAGACCCTTCCTTCTGCAAAACCGTTCTTTCTAACCAAAATAACGGCACCATCTTTGACTATACCCGCATCTCTGTCCGAAAATCCCTGTCCCAATCCCGCAAATTCTTGAACTTACTCGATTCAATTCTTCAAGATAAATCCTCTTTGTCACAACCCACAATTTTCGCCCTTGAAGATTGTCGATTCCTCATTGAACTAAACTTCGAGTCCTTATCAAACATCCTTAACACCGTCGACAAAGCTAACGATGTTCTTCCCACCTCACAAGCAGAAGACGAGCACACCCTGCTCAGTGCTGTTCTCACAAACCAACAAACTTGTTCAGATGGCATTCAGTTCTCAGCTTCAGATCAAAGAGTGAAGAACGATCTTTCCTCCACACTCTCCAATGACACTAAGCTTCACGGTCTTTCACTTTCCCTGTTCGTGAAAGGTTGGGTGCCAGAGAAGAAAATCGCAACATCATGGCCAAAAAATGGAAGACATTTGAGCTTCCAGAATGGTCGTTTACCGTTGAAGATGTCAAATCAAGCACGTGCTATTTATGATTCGGCTAGAGGCCATGGGAGAAAACTGCTTCAAACATTGGATGAAAGCGTGACGGTTATAGATGTTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTCACAACTATCAATGATGCTATATCAGTTGCACCAAATAACACAGCTTCTGGTGTTGGCTACTTTCTAATTTTTGTCACTGAAGGTGTGTATCAAGAATATGTGTCTATTCCCAAAAACAAAAAGTACTTGATGATGGTTGGAGATGGAATCAATCGAACAATTATCACTGGTGATCACAATGTTGTTGATAATTACACAACATTCAATTCAGCAACATTTGCTGTGGTGGCAGAAGGATTCCTAGCAGTTAACATGACATTTCGCAACACTGCTGGGCCAAGCAAGCACCAAGCTGTTGCAGTAAGAAACGGGGCTGATTTGTCCACTTTCTATAGCTGTAGCTTTGAAGGGTATCAAGACACTTTATATACGCATTCTCTCAGGCAATTTTACCGTGAATGTGACATATATGGCACGGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTCCAAAATTGTAACTTGTATCCTCGCCTACCTATGAGTGGACAATTCAATGCTATCACTGCTCAAGGTAGAACTGACCCAAATCAAAATACTGGTACTTCTATACATAATGCAACCATAAAAGCTGCTGATGATTTGGCTCCTATGGTTGGTACTGTGAAAACATACCTTGGGAGGCCGTGGAAGGAGTACTCAAGGACTGTTTATATGCAATCTTTCATGGATAATTTGATAGATCCTGCTGGGTGGCGTGAATGGAGTGGGGATTTTGCATTAAGCACATTGTATTATGCAGAGTATAATAATACTGGACCTGGTTCGGATACTACAAATAGAGTGACTTGGCCTGGATATCATGTTATCAATGCTACTGATGCAGCCAATTTCACTGTGTCTAATTTCTTGGCTGGGGATAATTGGCTACCTCAAACTGGTGTTCCATACAATAATTCCCTCACAATATTCCTCATTCTATTTCTCCTACCATCTTTATTTGCCTCTATAGCTTTGGCAGACACCCCTCCCACTAACACCGTTTCTCCTGGAACCGCATGCAAATCCACCCCAGACCCAACTTATTGCAAGACCGTTCTCCCTCCCCAAAACGGCAACGTTTACGACTACGGCCGTTTCTCAGTGAAAAAGTCACTATCACAAGCCCGCAAGTTCTTGAACCTTGTCGATAAATATCTCCAACGCCGTTCCACTCTTTCCGCAACCGCCATCCGTGCTCTCCAAGATTGCCGAACGCTCGGCGAACTCAACTTGGATTTTCTCTCAAGTTCCTTCCAAACAGTGAACAAGACAACCAGATTCCTCCCTACTTTACAAGCTGATGACATCCAATCCCTCCTCAGTGCCATCCTAACCAACCAACAAACCTGTTTGGATGGCCTTAAAGACACCGCTTCCGCTTGGAGCGTTAGAAACGGACTCTCTATCCCACTCTCTAACGACACCAAACTCTACAGTGTCTCTCTTGCTCTCTTCACCAAAGGCTGGGTTCCCAGCACTAAAGTCAAGAAAGCCAATGCGTTGCACCCAACCAAACAACAACTTGGATTCCGAAACGGGCGTTTGCCACTCAAAATGTCAGGTAAAACTCGCGCGATCTACGAGTCTGTGAGTCGGAGAAAGCTACTTCAGGCTACAGTTGGTGATGAGGTTGTAGTGAGAGACATCGTGACGGTGAGCCAAGATGGAACTGGAAACTTCACCACTATCAATGACGCCATTGCCGCAGCTCCAAACAAATCTGCCTCCACCGACGGTTACTTCCTCATCTATGTCACCGCCGGTGTATACGAAGAATACGTCTCCATTGATAAGAAAAAAACTTACCTCATGCTCGTCGGAGATGGTATCAACAAAACAATTATCACCGGCAATCGTAGCGTCGTGGATGGATGGACAACCTTCAGCTCCGCAACCTTGGCTGTGGTTGGGCAAGGATTTGTGGGTGTGAACATGACAATCCGTAACACCGCGGGGGCTGTGAAGCACCAAGCAGTGGCAGTTAGAAATGGAGCTGATTTGTCCACGTTTTACAGTTGCAGCTTTGAGGGGTACCAAGACACACTCTACACACATTCCCTGAGACAATTCTATAGGGAATGTGATATCTACGGAACTGTAGATTTCATATTCGGGAACGCTAAGGTTGTTTTCCAAAATTGCAACTTGTATCCTCGTCTCCCGATGAGTGGGCAATTCAACGCCATAACCGCACAAGGCCGAACCGACCCGAACCAAGACACGGGTACTTCGATCCATAACTGTACAATTAGAGCAGCGGATGATTTGGCTGCGAGCAATGGTGCGGCTGCAACGTATCTTGGAAGGCCATGGAAGGAGTATTCAACGACGGTTTATATGCAAACTTTTATAGACAGTGTGGTGGATGGTGCTGGGTGGCGTGCATGGGATGGTGATTTTGCTTTGAGCACATTGTATTACGCTGAGTTCAATAACAATGGGCCAGGGTCTAGTACAGCTGGTAGAGTGACGTGGCCAGGGTACCATGTGATGAATGCCACGGATGCAGCTAACTTTACGGTGTCAAACTTCTTGCTTGGGGATGATTGGTTGCCACAGACAGGAGTGTCTTACACCAATACCTTGATATAG 3345 0.4502 MTLNNLSILTLSVLLLLSIAEKYHAAAPIFTPRTICNSTTDPSFCKTVLSNQNNGTIFDYTRISVRKSLSQSRKFLNLLDSILQDKSSLSQPTIFALEDCRFLIELNFESLSNILNTVDKANDVLPTSQAEDEHTLLSAVLTNQQTCSDGIQFSASDQRVKNDLSSTLSNDTKLHGLSLSLFVKGWVPEKKIATSWPKNGRHLSFQNGRLPLKMSNQARAIYDSARGHGRKLLQTLDESVTVIDVVVVSQDGSGNFTTINDAISVAPNNTASGVGYFLIFVTEGVYQEYVSIPKNKKYLMMVGDGINRTIITGDHNVVDNYTTFNSATFAVVAEGFLAVNMTFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNATIKAADDLAPMVGTVKTYLGRPWKEYSRTVYMQSFMDNLIDPAGWREWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLAGDNWLPQTGVPYNNSLTIFLILFLLPSLFASIALADTPPTNTVSPGTACKSTPDPTYCKTVLPPQNGNVYDYGRFSVKKSLSQARKFLNLVDKYLQRRSTLSATAIRALQDCRTLGELNLDFLSSSFQTVNKTTRFLPTLQADDIQSLLSAILTNQQTCLDGLKDTASAWSVRNGLSIPLSNDTKLYSVSLALFTKGWVPSTKVKKANALHPTKQQLGFRNGRLPLKMSGKTRAIYESVSRRKLLQATVGDEVVVRDIVTVSQDGTGNFTTINDAIAAAPNKSASTDGYFLIYVTAGVYEEYVSIDKKKTYLMLVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAKVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQDTGTSIHNCTIRAADDLAASNGAAATYLGRPWKEYSTTVYMQTFIDSVVDGAGWRAWDGDFALSTLYYAEFNNNGPGSSTAGRVTWPGYHVMNATDAANFTVSNFLLGDDWLPQTGVSYTNTLI. 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05489 1114 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Seca1g05489 1114 SUPERFAMILY Pectin lyase-like 797 1111 IPR011050 -
Seca1g05489 1114 ProSitePatterns Pectinesterase signature 2. 947 956 IPR033131 -
Seca1g05489 1114 PANTHER PECTINESTERASE 19 548 - -
Seca1g05489 1114 FunFam Pectinesterase 239 558 - -
Seca1g05489 1114 CDD PMEI-like_3 589 740 - -
Seca1g05489 1114 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 182 IPR035513 -
Seca1g05489 1114 FunFam Pectinesterase 588 738 - -
Seca1g05489 1114 SMART PMEI_2 27 181 IPR006501 GO:0004857
Seca1g05489 1114 SMART PMEI_2 582 735 IPR006501 GO:0004857
Seca1g05489 1114 FunFam Pectinesterase 794 1113 - -
Seca1g05489 1114 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 184 IPR035513 -
Seca1g05489 1114 CDD PMEI-like_3 34 182 - -
Seca1g05489 1114 SUPERFAMILY Pectin lyase-like 245 555 IPR011050 -
Seca1g05489 1114 Pfam Pectinesterase 246 544 IPR000070 GO:0030599|GO:0042545
Seca1g05489 1114 Pfam Pectinesterase 801 1099 IPR000070 GO:0030599|GO:0042545
Seca1g05489 1114 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 589 738 IPR035513 -
Seca1g05489 1114 Gene3D Invertase/pectin methylesterase inhibitor family protein 588 738 IPR035513 -
Seca1g05489 1114 FunFam Pectinesterase 33 184 - -
Seca1g05489 1114 Pfam Plant invertase/pectin methylesterase inhibitor 589 735 IPR006501 GO:0004857
Seca1g05489 1114 Pfam Plant invertase/pectin methylesterase inhibitor 33 164 IPR006501 GO:0004857
Seca1g05489 1114 NCBIfam pectinesterase inhibitor domain 556 716 IPR006501 GO:0004857
Seca1g05489 1114 Gene3D - 240 558 IPR012334 -
Seca1g05489 1114 Gene3D - 795 1113 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05489 Seca-Chr1 158573901 158586915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05489 6 558 Carbohydrate Esterase AT4G02330 59.826 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05489 K01051 - gmx:100800971 974.926