Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05488 ATGGCTATGGATCCAGATATTGAAACAAAGTATGCGCAAAACACTAAGGTTATGATAGGCTCTGCAATCCTTCTCTTCATAATTATACTTATTGTCGTTTTATTTCGCACCTACGTTTACCTCTGCCGCCGGCGCCGGAGCCGGAGCGTTCTCTCCTCTCATTCGCTTCCCACAACCACCGCTTCCAAAGACGAATGCCTTGATCCTTCCGTTCTCAAATCCCTTCCTATTTTCAGTTACTCCTCCGCTATCCACCGCCACCTCCACGACTGCGCCGTCTGCTTGTCGGAGTTCGGCGACGGCGACGAATTCCGTGTGCTTCCAAACTGTAACCACGCTTTTCACTCCCATTGCATCGACGCTTGGTTCGCCTCTCACTCGAACTGTCCTCTCTGCCGAACCGCGGTACAACCGGCACCGGTTTCATCTGAATCTGAACCGTTCTCTGTTTCGGTTTCAGGATCTGAACCGGGTGAGGGTTGCTCGTCTTTTCCTGAACCGGTTACGTGTCCGAGAAAGCCGCTGAGTATAATCGTGGAGCTGCCCCGAGAGGATGGAGGGTCGGATCCTGTACCCGGAGAAAACGGGTTTAAATGCTCCTTGAAGAGGCTTTGCAGCGTGTAA 624 0.5208 MAMDPDIETKYAQNTKVMIGSAILLFIIILIVVLFRTYVYLCRRRRSRSVLSSHSLPTTTASKDECLDPSVLKSLPIFSYSSAIHRHLHDCAVCLSEFGDGDEFRVLPNCNHAFHSHCIDAWFASHSNCPLCRTAVQPAPVSSESEPFSVSVSGSEPGEGCSSFPEPVTCPRKPLSIIVELPREDGGSDPVPGENGFKCSLKRLCSV. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05488 207 CDD RING-H2_EL5-like 90 133 - -
Seca1g05488 207 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Seca1g05488 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 139 IPR013083 -
Seca1g05488 207 SMART ring_2 91 132 IPR001841 -
Seca1g05488 207 SUPERFAMILY RING/U-box 71 139 - -
Seca1g05488 207 FunFam E3 ubiquitin-protein ligase ATL6 56 139 - -
Seca1g05488 207 Pfam Ring finger domain 90 133 IPR001841 -
Seca1g05488 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05488 Seca-Chr1 158570784 158571407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05488 11 206 Rapid Response to Elicitors AT3G16720 32.365 1.61e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05488 - - gmx:102665377 230.72