Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05482 ATGACTGAAGTTAATGCAGGCGCTGAAATCCCTCAAAACATGACCATTTACATCAACAACCTTAACGAGAAAATTAAGATTGAGGAGTTGAAGAAGTCTTTGCATGCTGTTTTCAGTCAGTTCGGGAAGATACTTGACGTGTTAGCTTTCACGACCTTAAAACACAAGGGTCAAGCTTGGGTGGTCTTTGAAGATGTCTCTTCTGCTTCCAATGCCCTTAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGAATACAGTATGCAAAAACTAAATCCGATATAATAGCAAAAGCGGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGCATGATGACAAAGGCAAAAAAAGGAAGGACCAACTTGATGCTAATTTAGCTGGAATGGGCCTAAATCCTGCTTATTCTGGTGCTTATGGTGCAGCACCCGCTATACCTTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGCTCCTGCGCCGCCAAATAATATTCTGTTTATTCAGAATCTTCCCAATGAGACAACTCCCATGATGCTGCAAATGCTCTTTCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGAATTGCCTTTGTGGAATATGGAGATGAGATGCAATCCACTGTAGCTATGCAGGCGCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTACGCCAAGAAATAG 726 0.4201 MTEVNAGAEIPQNMTIYINNLNEKIKIEELKKSLHAVFSQFGKILDVLAFTTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQLDANLAGMGLNPAYSGAYGAAPAIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05482 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Seca1g05482 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 228 IPR000504 GO:0003723
Seca1g05482 241 CDD RRM1_U1A_like 15 92 - -
Seca1g05482 241 SMART rrm1_1 168 237 IPR000504 GO:0003723
Seca1g05482 241 SMART rrm1_1 15 89 IPR000504 GO:0003723
Seca1g05482 241 FunFam U2 small nuclear ribonucleoprotein B'' 158 241 - -
Seca1g05482 241 Gene3D - 8 102 IPR012677 -
Seca1g05482 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Seca1g05482 241 CDD RRM2_U1A_like 165 237 - -
Seca1g05482 241 SUPERFAMILY RNA-binding domain, RBD 12 230 IPR035979 GO:0003676
Seca1g05482 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 81 241 - -
Seca1g05482 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 241 IPR000504 GO:0003723
Seca1g05482 241 Gene3D - 155 241 IPR012677 -
Seca1g05482 241 MobiDBLite consensus disorder prediction 106 126 - -
Seca1g05482 241 FunFam U1 small nuclear ribonucleoprotein A 8 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05482 Seca-Chr1 158516899 158520775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05482 14 105 Eukaryotic Initiation Factors Gene Family AT2G23350 28.723 9.73e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05482 K11091 - gmx:100500002 405.216