Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05475 ATGATCATTATGGCACGCCTTATGTTACTGCTTGCATTGTTTCTTTCATTTACTAGCCGAATGGTATTTGCAAAAGGGAAAGATAATGTTAGAGAAGCTTGCAGTGTAACAAGGTACCAAGACATCTGTGTCCACTCCCTAGCACAATTCTCCAACACTGCAGGAAGAAGCCCCAGCAAGTGGGCACGTGCAGGAGTGTCAGTAACAATAAGCGAGGTTAAGAATGTTCAAGCTTATCTCACAAAATTGAAGAGGAATGGACGAATGAAAGGAAGAAACAGAGTGGCACTTTCAGATTGTGTTGAGACTTTTGGTTATGCACTTGATGAGCTTCACAGATCACTTGGTGTGCTTAGGAGGTTAAGCAAAAGCACGTTTAGTACCCAAATGGGGGACCTTAACACATGGATTAGTGCAGCACTTACTGATGAAGACACTTGCCTCGATGGATTTGGAGACAAAACTGGGAGGGAAATCAAATTGCTGCAAAAACGGGTTCAGAATGTGTCTTACATAACAAGTAACGCTCTTGCTCTTGTTAACAAACTTGCCACTACAGGTCTGGGAAGCGTCACTGATCCATAG 585 0.4308 MIIMARLMLLLALFLSFTSRMVFAKGKDNVREACSVTRYQDICVHSLAQFSNTAGRSPSKWARAGVSVTISEVKNVQAYLTKLKRNGRMKGRNRVALSDCVETFGYALDELHRSLGVLRRLSKSTFSTQMGDLNTWISAALTDEDTCLDGFGDKTGREIKLLQKRVQNVSYITSNALALVNKLATTGLGSVTDP. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05475 194 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 183 IPR035513 -
Seca1g05475 194 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 185 IPR035513 -
Seca1g05475 194 CDD PMEI-like_3 33 185 - -
Seca1g05475 194 SMART PMEI_2 25 179 IPR006501 GO:0004857
Seca1g05475 194 Pfam Plant invertase/pectin methylesterase inhibitor 29 179 IPR006501 GO:0004857
Seca1g05475 194 FunFam Pectinesterase inhibitor 3 25 184 - -
Seca1g05475 194 NCBIfam pectinesterase inhibitor domain 7 183 IPR006501 GO:0004857
Seca1g05475 194 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05475 Seca-Chr1 158458012 158460440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05475 30 190 Carbohydrate Esterase AT3G14310 34.940 1.70e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05475 - - gmx:100791264 278.1