Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05474 ATGGCATCAGGTTGGGGAATTACAGGCAACAAAGGTCGTTGCTACGATTTCTGGATTGATTTCAGCGAATGCATGTCTCGCTGCAGAGAGCCTAAGGATTGTGCCCTTCTCCGTGAAGACTACCTCGAGTGCCTCCACCATTCCAAAGAGTTCCAACGAAGAAACCGGATTTACAAGGAGGAGCAGCGCAAACTAAGAGCTGCTTCCAGGAAAGATAAGGACGATGAAGAAAGAAAGAAAATGAGTAGACGTGCGAGCAGAACTGTTTACGTTGGAAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCAGAAGTATGGACACATAACTCATATTGACCTAAAGGTTCCGCCAAGGCCACCTGGCTATGCATTCGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGTTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCACATGGCGGGCGTGGTCATTCATCGTCGAAAGATCGATATAGTAGTCACAGCAATGGTCGGGGTGGACGTGGAGTATCCAGGCGCTCTGAATATCGTGTACTAGTCACTGGATTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCTCAAGTTTTTCATGATGGAAGGGGTACTACGGGGATTGTGGACTACACCAACTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCAGGGCTTATGTTCGTGTGAGGGAATATGATTCGAGGAGGGACTCCTCTAGAAGTCCCAGTCGTGGCCCATCGCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGCCGCAGTCGTAGCCGTAGTTACAGTCGGGGCCGTAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAACGTTCACCAGCTAAATCTCCATCAAAATCTCCTTCTCGATCTCGCTCAAGATCAAGGTCCCGCTCACTATCAGGGTATGAAATGTTTTTAAATTTGTACAATTTTTTGTATTTTTGTCTATTACTATTTGAATGA 1086 0.4641 MASGWGITGNKGRCYDFWIDFSECMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKEEQRKLRAASRKDKDDEERKKMSRRASRTVYVGNLPGDIREREVEDLFQKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSKDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSRSYSRGRSQSKSPKGKSSQRSPAKSPSKSPSRSRSRSRSRSLSGYEMFLNLYNFLYFCLLLFE. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05474 361 MobiDBLite consensus disorder prediction 286 302 - -
Seca1g05474 361 CDD RRM2_SF2_plant_like 191 266 - -
Seca1g05474 361 MobiDBLite consensus disorder prediction 62 84 - -
Seca1g05474 361 Pfam NADH:ubiquinone oxidoreductase, NDUFS5-15kDa 12 64 IPR019342 -
Seca1g05474 361 CDD RRM1_SF2_plant_like 88 158 - -
Seca1g05474 361 MobiDBLite consensus disorder prediction 266 337 - -
Seca1g05474 361 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 81 190 - -
Seca1g05474 361 SUPERFAMILY RNA-binding domain, RBD 86 257 IPR035979 GO:0003676
Seca1g05474 361 Gene3D - 190 268 IPR012677 -
Seca1g05474 361 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 60 338 - -
Seca1g05474 361 FunFam serine/arginine-rich splicing factor SR34A-like 191 268 - -
Seca1g05474 361 Gene3D - 53 189 IPR012677 -
Seca1g05474 361 MobiDBLite consensus disorder prediction 150 187 - -
Seca1g05474 361 MobiDBLite consensus disorder prediction 150 188 - -
Seca1g05474 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Seca1g05474 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 162 IPR000504 GO:0003723
Seca1g05474 361 SMART rrm1_1 88 158 IPR000504 GO:0003723
Seca1g05474 361 SMART rrm1_1 192 263 IPR000504 GO:0003723
Seca1g05474 361 MobiDBLite consensus disorder prediction 303 337 - -
Seca1g05474 361 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 11 52 - -
Seca1g05474 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 255 IPR000504 GO:0003723
Seca1g05474 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05474 Seca-Chr1 158438203 158447888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05474 83 253 Eukaryotic Initiation Factors Gene Family AT4G34110 23.034 1.60e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05474 K12890 - gmx:100789847 350.903