Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05468 ATGTCCCCTGCATATGCAACTCTGATCACTTCTCTCTCTTGTTCATCCCCAATGAAACAAACCGATACGTTAATCTCAACCATATTTCAATGGCTGAGATTCATTTTCTTCTCTCCTTGTCCTCAGAGAGCTCTTTTGTCTGCGGTTGATGTCCTACTCCTTCTCATCCTCTTCATCTTTGCTGTCATCAAGCTCTATAAAAGGTTCACCTCCAATGGCGATTCCCCCAATGAACTCAACAAGACCCTCATAAGCAAAAACAGATACTCTGTCATAACAACTACATGGTTTAAGCTAACTCTAACTGTAACCATTGTTTTGGCCATACTGTACACGGTTGCTTGCGTTCTTGTATTCACCAGTTCAGCCAAGCTTCAATGGAACCAAGTTGATGGGGTGTTTTGGTTAGTCCAGGCCATAACTCATGTAGCACTTGCAATCTTAATCATACATGAGAAAAAATTTGAAGCTGTTACACACCCAATGTTGCTTAGAGTTTATTGGGTTGTGAATTTCATTATCATTTCCTTGTTCACAGCATCTGGGGTTGTACGTTTGGTTTCTGTGGATGTGGATGAAACCAAAGACTTCATCTTTAAGGTGGATGACGTGGTTTCTTTCATTTCACTCCCTCTGTCGCTATTTCTTCTTTGTGTATCGGTTAAAGGAGCCACTGGGGTTATACCGACAGAACAAACACAACCACTTATTGACGACGAAACGAAGCTACATCTGAGAAACTCTGAGGTTACTTCCTTTGCTTCAGCTTCTATAGTTTCCAAGGCATTTTGGATTTGGATTAACCCGTTACTGAGTAAAGGGTACAAATCACCATTGAAAATTGATGAGATTCCAACACTTTCTCCTGAGCATAGAGCAGAGAAGATGTCAATTTTGTTTGAAGCAAAATGGCCTAAAACAAACGAGAGTAATAAGCACCCAGTTAGAATCACCTTGATTCGGTGCTTCTGGAAGGAGTTAGCATTCACTGCATTCCTTGCCATTGTTAGGCTTTGTGTGATGTTTGTAGGGCCGGTTCTCATACAAAGTTTTGTTGATTTCACATCAGGGAAGAGAAGCTCTGTGTATGAAGGATATTACCTTGTGTTGATTCTTCTCATTGCTAAATTCATAGAAAGCATGACCACTCACCATTTCAACTTCAATGCTCAGAAGCTTGGGATGCTTATCAGGTGCACACTTACCCCTTCTTTGTATAAGAAAGGGTTAAAGCTTTCCTTCTCTGCTAGGCAGGATCATGGTGTAGGGACCATTGTGAATTACATGGCGGTTGATACACAACAACTCTCTGATATGATGCTTCAGTTACATTCTATATGGATGATGCCACTTCAAGTTGGAATTGGCTTATTTCTGCTTTACAATTGTCTTGGTGCATCAGCAGTTACTGCATTGCTTGGACTTATTGGTATTATTGTGTATTCTGTGATTGGTACCCGTAGAAACAACAGGTTCCAATTTAATGTGATGCTGAACCGTGACTCAAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGTGTGATCAAGTTTCAGGCTTGGGAAGAACATTTCAATGGGAGAATTATGGGTTTCCGTGGGTCAGAATATGCTTGGCTTTCTAAGTTGATGTTCTCAATCTGTGGCAATATTATTGTGATGTGGAGCACACCTTTATTGATAGCAACTCTAACTTTTGCTACGGCTATTTTGCTTGGAGTTCAGCTTGATGCAGCCACAGTCTTCACCACAACAACTGTGTTCAAGATCTTGCAGGAACCTATTAGGACATTCCCACAGTCTATGATATCTCTTTCTCAAGCAATGATATCACTGGAGAGGTTAGATAGGTTCATGTTGAGCTCAGAATTGTCTAATGATTCAGTTGAGAGAGAAGAAGGGTGTGGTGGAGAAACAGCAATGGAAGTTAAAGATGGGAACTTTAGTTGGGATGATGATAGCCTGCATCATCAGGACTTGAAAAATGTTAATTTGGAGATCAAAAAGGGAGGGCTTACAGCAATTGTTGGGACTGTTGGGTCAGGAAAGTCATCTCTCCTTGCATCAATTCTTGGTGAGATGTGCAAAATTTCTGGAAAGGTTCGGGTTTGTGGGAGTATTGCTTATGTTGCACAAACATGTTGGATTCAAAATGGGACAATTGAAGAAAACATTCTCTTTGGTTTACCAATGGACAGAAATAAGTACAATGATGTCATCAAGGTGTGTTGCTTGGAGAAAGATTTGGAAATGATGGATTTTGGGGATCAGACAGAGATTGGAGAACGTGGAATCAACCTAAGTGGAGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTATATCAAGACCGTGATATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCACACTGGCTCTGAAATATTTAAGGATTGCGTGAAGGGAGCTCTAAAAGGCAAGACCGTTATTCTTGTAACACACCAAGTAGATTTCCTACATAATGTGGATCTTATTATTTGCTTGCTAAAGGTGATGAGGGATGGTATGATAGTCCAATCAGGGAAATACAATGATCTACTAGATTCTGGAATGGATTTTAAAGCTTTGGTAGATGCACATGAGACCTCAATGGAACTAGTAGAGCAGGGTGCGGGTGAAAATTTGAACAAACCAATGAAATCTTCAGAGGCAGATTCTATTTACAAAGGAACCAATGGTGAAAGCAATTCTGTTGAACAGCCAGAGTCTGCCAAGAAAAGTTCTAAACTTATCAAAGAAGAAGAGAGAGAAACTGGCAAAGTGAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGAATTACAGGAGTAGTGCTTCTTTCTTTGTTATGGCAAGGGACTTTGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCAGAAAAGCGTGCTCAAATGTTTAACCCTTCCCTTTTTATTTCCATCTATGCAATTATTTCTGTTGTTTCAGTTATTGTGGTAGTGATAAGATCCTACTCCTTTACATTCATGGGACTAAAGACAGCACAACTTTTCTTCACACAAATTCTTAATAGCATCTTGCATGCGCCAATGTCTTTCTTTGATACTACACCATCTGGGAGAATTCTAAGCAGGGCATCCACTGATCAAACCAATGTTGATATCCTTCTCCCTTTGTTCATGGGAGTTGTTATTGCCATGTACATCACAGTGCTCAGCATCTTAATCGTCATCTGTCAAAATTCTTGGCCAACAGTGTTCTTGATAATTCCTCTTATTTGGTTAAATATATGGTACCGGGGTTACTATCTTGCTTCATCTCGTGAATTAACTCGCCTGGATTCAATTACCAAAGCACCTTTGATTCATCACTTCTCTGAAAGCATTGCAGGGGTCATGACAATACGTGCATTTAGAAAGCAAAAGAAATTTTGTGAAGAAAATCTCAAACGGGTGAATGCTAATTTGAGAATGGATTTCCACAACTATAGTTCCAATGAGTGGTTGGGACTACGCTTAGAATTGCTTGGAAGCTTTGTCTTTTGCATCTCTGCTATGTTCATGATCATCCTACCTAGCAGTATCATAAAGCCAGAAAATGTTGGTTTATCTCTCTCTTATGGTTTGTCCTTAAATTCGGTGTTGTTCTGGTGTGTATACATGAGCTGTTTTGTTGAAAACAAAATGGTATCTGTTGAGAGGATAAAACAGTTCACAAATATTCCATCGGAATCAGCATGGAATATGAAGGATTATTTGCCTCCTTCAAATTGGCCAGGTCAAGGCAATGTAGATATCAAAGACTTGGAGGTGAGATATCGTCCAAGCACTCCTTTGGTTCTTAAAGGCATTACTTTAAGCATTAGTGGAGGAGAGAAGATTGGTGTTGTTGGTCGAACTGGAAGTGGAAAATCAACTTTGATTCAAGTTTTCTTTAGGCTGGTGGAACCTTCAAGAGGGAAAATAATAATTGATGGTATTGACATATCTGTTTTGGGGCTTCATGATCTTAGATCTCGGTTTGGTATCATTCCTCAGGAGCCTGTCCTTTTTGAAGGAACTGTTAGAAGCAACATTGATCCAATTGGACAGTACACAGATGAAGAGATATGGCAGAGTTTGGAACGCTGTCAGCTAAAAGAAGTGGTGGCTGCTAAGCCTGAAAAGCTTGACTCTTTAGTGGTGGATAATGGAGAGAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTTTAGGGCGGGTTATGCTTAAGAGAAGCAGGCTCTTGTTTATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACTGATGGTGTAATTCAAAGGATCATTAGAGAAGACTTTGCAGCTTGTACCATCATCAGCATTGCTCACAGAATCCCCACAGTCATGGACTGTGATAGAGTTTTGGTTGTAGATGCAGGGAGAGTGAAAGAATTTGATAAGCCTTCCAACTTGCTTCAGAGGCAATCTCTATTTGGGGCATTAGTTCAAGAGTATGCCAATCGCTCCACAGGACTATAA 4530 0.4044 MSPAYATLITSLSCSSPMKQTDTLISTIFQWLRFIFFSPCPQRALLSAVDVLLLLILFIFAVIKLYKRFTSNGDSPNELNKTLISKNRYSVITTTWFKLTLTVTIVLAILYTVACVLVFTSSAKLQWNQVDGVFWLVQAITHVALAILIIHEKKFEAVTHPMLLRVYWVVNFIIISLFTASGVVRLVSVDVDETKDFIFKVDDVVSFISLPLSLFLLCVSVKGATGVIPTEQTQPLIDDETKLHLRNSEVTSFASASIVSKAFWIWINPLLSKGYKSPLKIDEIPTLSPEHRAEKMSILFEAKWPKTNESNKHPVRITLIRCFWKELAFTAFLAIVRLCVMFVGPVLIQSFVDFTSGKRSSVYEGYYLVLILLIAKFIESMTTHHFNFNAQKLGMLIRCTLTPSLYKKGLKLSFSARQDHGVGTIVNYMAVDTQQLSDMMLQLHSIWMMPLQVGIGLFLLYNCLGASAVTALLGLIGIIVYSVIGTRRNNRFQFNVMLNRDSRMKAVNEMLNYMRVIKFQAWEEHFNGRIMGFRGSEYAWLSKLMFSICGNIIVMWSTPLLIATLTFATAILLGVQLDAATVFTTTTVFKILQEPIRTFPQSMISLSQAMISLERLDRFMLSSELSNDSVEREEGCGGETAMEVKDGNFSWDDDSLHHQDLKNVNLEIKKGGLTAIVGTVGSGKSSLLASILGEMCKISGKVRVCGSIAYVAQTCWIQNGTIEENILFGLPMDRNKYNDVIKVCCLEKDLEMMDFGDQTEIGERGINLSGGQKQRIQLARAVYQDRDIYLLDDVFSAVDAHTGSEIFKDCVKGALKGKTVILVTHQVDFLHNVDLIICLLKVMRDGMIVQSGKYNDLLDSGMDFKALVDAHETSMELVEQGAGENLNKPMKSSEADSIYKGTNGESNSVEQPESAKKSSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITGVVLLSLLWQGTLMASDYWLAYETSEKRAQMFNPSLFISIYAIISVVSVIVVVIRSYSFTFMGLKTAQLFFTQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILLPLFMGVVIAMYITVLSILIVICQNSWPTVFLIIPLIWLNIWYRGYYLASSRELTRLDSITKAPLIHHFSESIAGVMTIRAFRKQKKFCEENLKRVNANLRMDFHNYSSNEWLGLRLELLGSFVFCISAMFMIILPSSIIKPENVGLSLSYGLSLNSVLFWCVYMSCFVENKMVSVERIKQFTNIPSESAWNMKDYLPPSNWPGQGNVDIKDLEVRYRPSTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPSRGKIIIDGIDISVLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEEIWQSLERCQLKEVVAAKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGVIQRIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGRVKEFDKPSNLLQRQSLFGALVQEYANRSTGL. 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05468 1509 CDD ABC_6TM_ABCC_D2 950 1242 IPR044726 GO:0140359
Seca1g05468 1509 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Seca1g05468 1509 FunFam ABC transporter C family member 10 311 624 - -
Seca1g05468 1509 CDD ABCC_MRP_domain1 642 846 - -
Seca1g05468 1509 CDD ABCC_MRP_domain2 1265 1485 - -
Seca1g05468 1509 Pfam ABC transporter transmembrane region 961 1203 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g05468 1509 Pfam ABC transporter transmembrane region 329 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g05468 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 870 IPR003439 GO:0005524
Seca1g05468 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1269 1501 IPR003439 GO:0005524
Seca1g05468 1509 Pfam ABC transporter 1284 1432 IPR003439 GO:0005524
Seca1g05468 1509 FunFam ABC transporter C family member 3 1250 1501 - -
Seca1g05468 1509 Pfam ABC transporter 661 794 IPR003439 GO:0005524
Seca1g05468 1509 FunFam ABC transporter C family member 5 913 1248 - -
Seca1g05468 1509 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524|GO:0016887
Seca1g05468 1509 Gene3D ABC transporter type 1, transmembrane domain 913 1248 IPR036640 GO:0005524|GO:0016020
Seca1g05468 1509 Gene3D ABC transporter type 1, transmembrane domain 317 617 IPR036640 GO:0005524|GO:0016020
Seca1g05468 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 869 IPR027417 -
Seca1g05468 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 328 608 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g05468 1509 SMART AAA_5 670 844 IPR003593 GO:0016887
Seca1g05468 1509 SMART AAA_5 1293 1477 IPR003593 GO:0016887
Seca1g05468 1509 Gene3D - 618 893 IPR027417 -
Seca1g05468 1509 Coils Coil 1138 1158 - -
Seca1g05468 1509 MobiDBLite consensus disorder prediction 886 915 - -
Seca1g05468 1509 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 254 1502 - -
Seca1g05468 1509 Gene3D - 1250 1500 IPR027417 -
Seca1g05468 1509 FunFam ABC transporter C family member 4 625 888 - -
Seca1g05468 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 952 1230 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g05468 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1260 1500 IPR027417 -
Seca1g05468 1509 SUPERFAMILY ABC transporter transmembrane region 318 620 IPR036640 GO:0005524|GO:0016020
Seca1g05468 1509 SUPERFAMILY ABC transporter transmembrane region 947 1247 IPR036640 GO:0005524|GO:0016020
Seca1g05468 1509 MobiDBLite consensus disorder prediction 882 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05468 Seca-Chr1 158397765 158403805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05468 598 863 Calmodulin-binding Proteins AT2G36910 30.742 1.88e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05468 - K05666 gmx:100808752 2405.94