Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05452 ATGGATCATAATGGTAAAAGAATGGAAGATATGACTGCTGATGACATCCGAAGCATGGAGTTTGCTAGTGAAGAGCATGGTCATATTTTTTATAATTCTTATGCTAAGCGTCATGGTTTTGTTGTTAGGAAAGATGAGATAAATCGGGATTTTAAGGGCAATGTCATTATGCGTCAGTTTGTGTGCAACAAAGAGGGTAGTAGGAACAAAAAGCATTTGATGAGGTTGGATAGGAAAAAAGACCATAGGCCATTAACACGTGTGGATTGTCTAGCTAAGCTACGAATTCGCTTAGATTATAAGACGTCTAAATGGAAAGTGGTTTCTTTTGTGGAGACTCACAATCATGAACTTACCCCTGCTAGTATTGTGCACTTACTACCTGCTTATAGAGGGTTGAATGATGTTGATAAAGCCCAAGTAGATAGGTTGCACGCACATGGTGTCAGAACATGTCATATAATGGGGTACATGCTAGATCAAAAAGGAGGTTATGCTTCCCTTGGCTTTTGTAGAAAGGATTTGTATAATTATATTGAACGACATAAACTTGAAAAGATAAAAGATGGTGATGCACATGTTGCCTTGTGTTATATACAAGCAAAGGCAAACAATGATCCCACGCTTCGGGCTAGTTTCCTTGCTTCAGAGGATGGTACCCTGAAGCATTTGTTTTGGGCTGATGGAGGTAGTAGGGTTGATTATTATTGCTTTGGGGATGTTCTAGCATTTGACACAACCTATAAGAAAAACAGATATAACAAGCCCCTTGTAATTTTTTCTGGTTGTAATCATCATGGTCAGACTGTTCTATTTGGTTGTGCTTTGGTTGCTGACGAGACGATTGAGACGTACAAATGGTTGTTACAGCAATTTCTCCGTGCAATGTCAGATAAACATCCAACTGCAGTGGTTACAGATGGAGATAGTAGTATGAGAGAAGCTATCAAGCAGGTGTTCCCCAATGCATCACATCGCCTTTGTGCATGGCATTTACACAAAAATGCGTGTGAAAATGTGAAGAATTCTGGTTTTTTGGATGATTTCAAGGCAGCCATGTATTCTAATTTCACTGTGGATCAATTTGAATTGTTTTGGAAGCGAATGGTTGCAAAGCACAGTCTTGTAGGGAACAAGTGGGTGACAAAAACCTATGAAAATAGGTCGTTGTGGGCCAGCGCATATTTCCGAGATAAATTTTTTGGGCGTATTAGAACAACATCACAATGTGAGGCTATTAATTCACTGGTGAAGGCATATGTTAATAAGAAGGATACCATTCTTGAATTCATCAATAGGTTTGAGCATGTTGTGAGAGAATATAGGAACAATGAGATGATTGCTGATTTCAAGTCTTTATTTACGCAGCCAGTGTTAACTACATCTCTTCATAAAATTGAGAGTGAGGCATCAAAATTATTCACATTAGAGATTTTTAAGGAAGTGAAATCTGAGATTGAGGTTGCCGGTGCTTTGAATGTAAATGAACGTGTAGACCATGGAGACAAAATGATTTTTAAGATGAGCCATTATTGTAATCGGGGTGTTGAATTTCAGGTTGAGTATGATGTTGTAAATTCAAGATTTGTATGTGAGTGTAGATTGCGTGAGAGTCGAGGAATCCCTTGTTCTCATATTATATGTGTCCTTAAAAATGAAAACATGCAAGCATTTCCTAGTAGTTTGATTGTAAAGCGTTGGACTAAGAAATGCAAGAGTGATCTTATTTCTTCATACCAATCAGAGGATGTGGATAATGATGTCATAAAAGAAGCACGTTTGGGGGCTGTAGGTGGAGCAATTCAGAGGTTGGGTTCCATTGCTAAAGAAAAGAAAGAATATTTCAATGATATAATAGATGATGTTTTGAAGCTTGTTCAAAAATATGATAGTATTGGGGAACCACGTGACAGACAAGCCTCAGGTGAGAAGATTGTGAAAGATCCACCTGTAGTGAAAACTAAAGGAGCACCACCTAAAAGAAAGTTTGGGAGGAAGAGGAGAAGGTGCTCAAATTGCAATAGAACCGGTCATATTCTCAACAAATGTCCTAAGCTTTATGGTAGGGGTAAGCAAAAAATGGAAGATGACAATGAGGCTAATGGAAGCACACCATTAGATGAAGTCAACGATGATGGCATGGAGCTTAGTAACCATACTCAAAGAATTAACGATAATGAAGTTGAAGTGAAAATTAGTGGAAGACATAAAGGGAAGGAAAAGGAATGCACCCAAGATGTGGAAGTGAAAGTGAGTGGTAGTCATGACGGGAAGGAAAAGGAATGCACCCAAAATTTGGAAGTGAAAGTGAGTGGTACTCATGAAGGGAAAGAGAAGGAATGCACCCAAGTAGATGAAACAGAACCTCACTCTCTAGAATTCTTTCCCCTCTTCTTTATGGCTACATTTGACCCTTGTGTTTTATTTTATTGTTCTTGCAGCAAGTAA 2448 0.3852 MDHNGKRMEDMTADDIRSMEFASEEHGHIFYNSYAKRHGFVVRKDEINRDFKGNVIMRQFVCNKEGSRNKKHLMRLDRKKDHRPLTRVDCLAKLRIRLDYKTSKWKVVSFVETHNHELTPASIVHLLPAYRGLNDVDKAQVDRLHAHGVRTCHIMGYMLDQKGGYASLGFCRKDLYNYIERHKLEKIKDGDAHVALCYIQAKANNDPTLRASFLASEDGTLKHLFWADGGSRVDYYCFGDVLAFDTTYKKNRYNKPLVIFSGCNHHGQTVLFGCALVADETIETYKWLLQQFLRAMSDKHPTAVVTDGDSSMREAIKQVFPNASHRLCAWHLHKNACENVKNSGFLDDFKAAMYSNFTVDQFELFWKRMVAKHSLVGNKWVTKTYENRSLWASAYFRDKFFGRIRTTSQCEAINSLVKAYVNKKDTILEFINRFEHVVREYRNNEMIADFKSLFTQPVLTTSLHKIESEASKLFTLEIFKEVKSEIEVAGALNVNERVDHGDKMIFKMSHYCNRGVEFQVEYDVVNSRFVCECRLRESRGIPCSHIICVLKNENMQAFPSSLIVKRWTKKCKSDLISSYQSEDVDNDVIKEARLGAVGGAIQRLGSIAKEKKEYFNDIIDDVLKLVQKYDSIGEPRDRQASGEKIVKDPPVVKTKGAPPKRKFGRKRRRCSNCNRTGHILNKCPKLYGRGKQKMEDDNEANGSTPLDEVNDDGMELSNHTQRINDNEVEVKISGRHKGKEKECTQDVEVKVSGSHDGKEKECTQNLEVKVSGTHEGKEKECTQVDETEPHSLEFFPLFFMATFDPCVLFYCSCSK. 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05452 815 MobiDBLite consensus disorder prediction 634 650 - -
Seca1g05452 815 SUPERFAMILY Retrovirus zinc finger-like domains 657 692 IPR036875 GO:0003676|GO:0008270
Seca1g05452 815 MobiDBLite consensus disorder prediction 689 709 - -
Seca1g05452 815 ProSiteProfiles Zinc finger SWIM-type profile. 518 554 IPR007527 GO:0008270
Seca1g05452 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 591 IPR031052 GO:0006355
Seca1g05452 815 ProSiteProfiles Zinc finger CCHC-type profile. 668 685 IPR001878 GO:0003676|GO:0008270
Seca1g05452 815 Pfam FAR1 DNA-binding domain 30 119 IPR004330 -
Seca1g05452 815 MobiDBLite consensus disorder prediction 634 668 - -
Seca1g05452 815 Pfam MULE transposase domain 241 335 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05452 Seca-Chr1 158306787 158310821 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g05452 MULE 8e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05452 - - ccaj:109792835 878.241