Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05448 ATGACGAAGAGGAAAAGTAATAGGATTGGGAAGGAGAGAAGGAAGATGAAGGGGACGCTGGGTAGCAGGCACTTGCAGCTTCAGCTTAGCCAAGTCTCTCTCATTCCCCCAATTTCTTCTACTTCTTCCGCCGTTCCTCGCTTCCAGAACCTTCTCGATGCCGAGGCCAATGATGATACTTCCTCTCGCGCTACTCTCATGGACGATGCTGCCGCCGCAGACGACAGAGATTTCATTCTCAGCCAGGACTTCTTTTGCACTCCAGATTACATAACCCCAGATAATCAGCATATTTTGAACGGTTTGGATTGCAACAAGGAAAATTCCCCTTGCCCTAAATCACCGGAGAAGCTGAATACTACCAAAAGCAAGAGATGCCGACTGGATGCTATCTCAGTAAACCCTCTCAGTCCTACCTTTTCTGGTGACCATCAACAAGTTGTGGAACTTGGAAAGGATTCTGTTGCTGAGGAAGTTGCTGCTGAGAAAACAATAGCAGCTGGTAAACCAAAGGCTCAAAATTATGTGTCACATTCTGCAGTTGCATTGCGTTGTAGGGTTATGCCTCCTCCTTGTATTAGGAACCCCTATTTGAAAGATGCTTCAGAAAAGGAGATAGATCCCTTTGGAAACCAAAGATCAAAATGTGAAGGTCTCTTCCCTGCAATTGCTGGTGGTGATGGGCTTTCACGCTATCGCACTGACTTTCATGAGATTGAGCAAATTGGTAGAGGGAACTTCAGTAGTGTTTTCAAAGTATTAAAGCGAATAGATGGCTGCTTGTATGCTGTGAAACGCAGCACTAGACCGTTACGCCTGGAAACAGACAGGAGAAAAGCCTTGATGGAAGTTCAAGCTCTGGCAGCCTTGGGTTTGTATTTTACATCTTCACCAGTTCACATATTTTCTTCTGCATAA 918 0.4542 MTKRKSNRIGKERRKMKGTLGSRHLQLQLSQVSLIPPISSTSSAVPRFQNLLDAEANDDTSSRATLMDDAAAADDRDFILSQDFFCTPDYITPDNQHILNGLDCNKENSPCPKSPEKLNTTKSKRCRLDAISVNPLSPTFSGDHQQVVELGKDSVAEEVAAEKTIAAGKPKAQNYVSHSAVALRCRVMPPPCIRNPYLKDASEKEIDPFGNQRSKCEGLFPAIAGGDGLSRYRTDFHEIEQIGRGNFSSVFKVLKRIDGCLYAVKRSTRPLRLETDRRKALMEVQALAALGLYFTSSPVHIFSSA. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05448 305 ProSitePatterns Protein kinases ATP-binding region signature. 242 265 IPR017441 GO:0005524
Seca1g05448 305 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g05448 305 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 97 291 - -
Seca1g05448 305 Gene3D Phosphorylase Kinase; domain 1 227 300 - -
Seca1g05448 305 SUPERFAMILY Protein kinase-like (PK-like) 230 290 IPR011009 -
Seca1g05448 305 ProSiteProfiles Protein kinase domain profile. 236 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05448 Seca-Chr1 158281269 158285649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05448 1 304 Core Cell Cycle Gene Families AT1G02970 52.396 7.50e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Seca1g05448 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05448 K06632 - gmx:547742 457.988