Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05446 ATGGGTGATAATAATATTGGGAAAGTCTCAGATACTGGGGTGGTTAAAGAGCAAAATCAATTGCTTCCAATAGCTAATGTGGGGCGTATTATGAAGCAAATTCTGCCTCCTAATGCAAAAATCTCCAAGGAAGCTAAAGAAACAATGCAAGAATGCGTCTCTGAGTTCATAAGCTTTGTTACCGGAGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACGCTCAATGGCGATGATATTTGTTGCTCCTTGTCTACCCTTGGATTTGATGACTATGCTGACCCACTCAAAAGGTATCTGAATAAGTATAGGGATTTGGAGGGTACTGATCGACAAAACTAA 345 0.4116 MGDNNIGKVSDTGVVKEQNQLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTLNGDDICCSLSTLGFDDYADPLKRYLNKYRDLEGTDRQN. 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05446 114 SUPERFAMILY Histone-fold 18 112 IPR009072 GO:0046982
Seca1g05446 114 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Seca1g05446 114 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Seca1g05446 114 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Seca1g05446 114 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca1g05446 114 Gene3D Histone, subunit A 10 114 IPR009072 GO:0046982
Seca1g05446 114 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 83 IPR003958 -
Seca1g05446 114 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 110 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05446 Seca-Chr1 158264259 158264603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05446 11 109 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.788 7.37e-56 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca1g05446 CBFD_NFYB_HMF 2.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05446 K08065 - gmx:100817274 187.578