Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05443 ATGTCAAATATTTCAGGTGATGAAGGAAGTTTCTCCTCAGGAAACAATGGAGAAAAACAGCTACAAAACCACCTCCATGACTCAAGTTCAGGACCATCTGATGCTTGCAATAGCAATGGCTCCACTAATCAACATCAAACCAAGAAGAAAAGAAACTTACCTGGAACCCCAGATCCTAATGCTGAAGTTGTTGCTTTATCACCAACCACATTAATGGCAACAAACAGATTCGTCTGTGAAATCTGCAACAAAGGGTTTCAGAGAGACCAAAACCTTCAGTTACACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGAACAAGCAATGAGGTGAAGAAACGGGTCTATGTGTGCCCTGAGCCATCATGTGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATCAAAAAGCATTATAGCCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAGTGCTCTAAAAGATATGCTGTCCAATCTGATTGGAAGGCCCACCAGAAAACATGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGATGCATTAACTGAAGAAAATAACCGAGTGAACCAGGGATTAACCAGTGGCATGCCACCAAATTTGCAAAGTCAAATGCCTGATCTTATGTCTTCTTTACCTCTAAAAGCTAGTTCCAACACTGCATCAGAATTCAATGACTATGACCCTAAGAACTCACTCAGATCACCCCCACAAGAACTTGTCCCAATACCATTCAGGTCCATGGGTGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGGGGTCCAAAAACCATGTCCCCTTCTTCTTCCAGCCTTCAGCTCAGTTCCAACATCAATTACTTGCAAGACAGCAAAAATGGAGGACTAATTTCTGGCACAGCTCAGATGTCTGCAACAGCTTTATTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAGTGTAAACTCCCCCATGATGCAAAAAGGCTTTGTTAGTAGCATGGCTGGTCCTGATCAAGTTCCTTCCATTAGACCACCATTTTCTGGTGCCATATTGCAGCATAACCACCCTTCCTATGACCACTTCCCTCCCCATCCTGATCTATCTAACATAGCAGGGGTAAGTGGTGGTGGAGCATTCACCAACCAATTGTTTCAAAAAGGACAAGAAGAAGCTTCACAACTATTTGATACTAACACTACTGCTGGTTCTACAATGAATGATATAGGAATGTTCAGCCAAATGTCTATGGGAAATCACCACAACCCAGAATTGATGAAGAATGTGGAACATTCTAGTTTGATCCATGGAAGAAATGTGGTAGAAAGTAACACAATGGAGCCACCAAGGTTTGGAGGTAGTGACATGACAACAGTTCATGACTTTTTGGGCATTGGGGGTTCAACTTCAAGAGCAGCTAGTTTGCATGACCCACAGCAACAAAGATTGGAAGCATTAAGCCACCAGAGGTTGGAAATTATGAATCACTTTCATCACCATCTTCCACATGAGGATTCAGCTATGGAGAAACCCATTTGGGATGTTTGA 1605 0.433 MSNISGDEGSFSSGNNGEKQLQNHLHDSSSGPSDACNSNGSTNQHQTKKKRNLPGTPDPNAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQMPDLMSSLPLKASSNTASEFNDYDPKNSLRSPPQELVPIPFRSMGGGMFSTNAGALFGGPKTMSPSSSSLQLSSNINYLQDSKNGGLISGTAQMSATALLQKAAQMGATASNSVNSPMMQKGFVSSMAGPDQVPSIRPPFSGAILQHNHPSYDHFPPHPDLSNIAGVSGGGAFTNQLFQKGQEEASQLFDTNTTAGSTMNDIGMFSQMSMGNHHNPELMKNVEHSSLIHGRNVVESNTMEPPRFGGSDMTTVHDFLGIGGSTSRAASLHDPQQQRLEALSHQRLEIMNHFHHHLPHEDSAMEKPIWDV. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05443 534 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 497 IPR031140 -
Seca1g05443 534 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Seca1g05443 534 SUPERFAMILY beta-beta-alpha zinc fingers 76 174 IPR036236 -
Seca1g05443 534 Gene3D Classic Zinc Finger 132 211 - -
Seca1g05443 534 MobiDBLite consensus disorder prediction 1 50 - -
Seca1g05443 534 SMART c2h2final6 153 173 IPR013087 -
Seca1g05443 534 SMART c2h2final6 118 148 IPR013087 -
Seca1g05443 534 SMART c2h2final6 77 99 IPR013087 -
Seca1g05443 534 Gene3D Classic Zinc Finger 55 123 - -
Seca1g05443 534 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Seca1g05443 534 Pfam Zinc finger, C2H2 type 77 99 IPR013087 -
Seca1g05443 534 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Seca1g05443 534 MobiDBLite consensus disorder prediction 1 62 - -
Seca1g05443 534 FunFam protein indeterminate-domain 12-like 56 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05443 Seca-Chr1 158229768 158232501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05443 48 354 IDZ Gene Family AT3G50700 54.518 4.02e-112 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g05443 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05443 - - gmx:100782774 832.787