Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05442 ATGGATGTCTGGAACGATGATTTTACGGAGCTGGAGACTGGGAGTTCGGTTGAGTCGTTTCAGAGGTTTTTGGTTTCGCAGAAAGAGCTCTTCCATAGCCAGATCGATCAGTTTCAAGAGATTGTCGTCACGCAATGCAAACTCACTGGCGTCAATCCTCTCTCTCAAGAAATGGCAGCTGGTGCTCTATCAATAAAAATTGGTAAAAGACCTAGGGATTTATTAAATCCAAAGGCTGTGCATTACATGCAATCAGTTTTTTCCATTAAAGATACAGTTAGCAAGAAAGAATCTCGTGAGATCAGTGCTTTATTTGGTGTTACAGTGACACAGGTGCGTGACTTTTTCACGAGTCAACGTTCAAGAGTAAGGAGGCTAGTTCAGTTGTCAAGGGAGAGGGCATTAAGATCTAATTCTTGTGAAGAATCTAATGATGGGCAAATAAACTCTGATCCTTTGAGACCAATAAATCCAGCTCCCTTAAACTCTGCTGGCCCTACCAATTCTGAAGAAGCATCTTGTTCAACACAGGAAGCAGCTTTGTCTGACCTAGATGACTTAGATAAACAATTTGTTGAGAACATTTTTAGTCTGATGCAGAAAGAGGAAACATTTTCTGGGCAGGAGAGATTGATGGAGTGGATATTGTCGATACAGAATTTTTCAGTGTTGTTGTGGTTTCTAACCAGAGGTGGTGCAATGACTTTAGTAACTTGGTTGAGTACAGCAGCTGTTGAAGAGCAAACAAGTGTCCTTCTTCTTATCTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCCCTTCCTACTCACATATCAGCTATATTGCAGAGTGTTAATAGACTAAGGTTCTACAGGACATCAGACATATCAAACAGGGCAAGGATTTTGTTATCGAAGTGGAGCAAACTATTAGCAAGGAACCAAGCAATAAAGAAACCTAATGGTGTTAAACCTTCTGGTGATAGTAAAAAAGACATAATGCTTTCTCAGAGGCAAGCTTATCTCTTATCTTATTTCCATGCAAATATTGGTCAAATTATGGGCTCTGGATCCTGGCATTCAAATATTGATGTTCCTGTAAGTCTTTTGTTAAACATATTCATTTCAGCTGGCAATTTCAGGAAACTGGAATCTCCTGTGAAATTGTTACAACCCAGCTCAGATGATTCTAATAAGAAACCCACCCTTGGTGTATCTTCTTCTCGTATCCTTGGAGCTTCTCTCTCTCTCTCTTCAGAAGCTAGGGAGCGCAGGAAAGTGCAATTGGTGGAACAGCCAGGCCAAAAATCAGTTAGTAGAAGCCCACAGGTGGCAAGAGCAGGCTCTGTAAGTCAAGGTCGTCCCATGTCTGCTGATGATATCCAGAAAGCAAAAATGCGTGCGTTATTTATGCAGAGTAAGTATGGGAAAACTGGTTCTTCAAAAGAAAGTAAAGACGCAAAAATTGACGGTCTGAATAAACCTCAGACAAATCAGGCCAGTATTGCAATTTGCTCTTCTAAAGTTCCTGTTCCACCTAAAATTGAAGAAGACAAGAAACCTCTGTTACTTCCCTCTAAAACCACTAATAGGCTGGACGCATCTTATTCTAAACCGAAAATGGATTTGAAGGAACCTCTCTGGGAGAAGTGCAAGAGGGTGCAAATCCCATGGAAAACACCAGCAGAAGTGAAACTTAAAGATTCCTGGAGAGTTGGTGCTGGTGCAAATAGCAAAGAGGTTGATGCCCAGGAAAACAGAAACCGCAGGGACAAGGAATCTATTTATCATAGTGTCCAAGAGATGCCATCTAACCCCAAGGAGCCATGGGATCTCGAAATGGACTATGATGACACTTTGACACCGGAAATTCCTATTGAACAGCTACCAGATGGTGATGGTGCAGAAATAGCAGTTTCCCCCAATCAGGTTGCAACTCATGCTATTCATGGGGTGGCCTCCACATCTTCAACCGTTAATGCAGCAACTGCTGAACCTGATTTAGAATTACTTGCCGTACTGCTGAAAAATCCAGAATTGGTATTTGCCTTAACTTCTGGACAAGCTGGTAGCATACCAAATCAGGAAACCCTGAAGCTGCTTGACATGATTAAGAGAGGCACTGTGAACAACTCTGGTTTAAGTGAAAATACAAATGGCAATTATGGCATGAGTGCAAAGGCCCCAGAGAAGGTTGAAGTTTCTCTCCCATCTCCAACTCCTTCAAGCGATCCAAGAACGAGTGGATGGAGCACAGAAGCACCAAAGAATCCTTTTTCACGGCGAAGTTCAGCACCTGATAGAGCTATCCACAACTCTGCTGCAGTGGTAACTACCAACTTAGTATCTCAGATTCCTATAACTAGCACTACAGTAAGGCAACAGCCAACAGTTGTGGCTCCATCTTCGAAACAGCTAACCAGCAGAACAGTTTCTCCATATTCACTGCCTCATGCAACTAATATTATTCCTGAAAAGCAATCATCACTAGCTCTTTCCTCTGTGCATGCATCCTCTGATATAAGTTTAACCATGAAGAACATAATCACTGCAAATGGACCTTCAGTTAACTTACCTGGTGCACATTCATCTTTAGCAATGCGGGCTGATGGCACGAGTAATGTAAAACCAGTACCTAATTTGAGTTTACAAGAGGGTTTGTCTAATTCATACCCTCAATCCTTCATGTTGGCCTCACCAACGCCATCACATTCAGCAACACAACAACAAAGACATCCACATTTGCTCCATCAGGCCCATTATACTGAACCTTCATATCGTAACACTGTCCATTCCTATCCACCACAAATCGAAAAATCAGGACCTGTGTCAGATTTGTGGAGAGTTAGGCAGGATGTGTCTTCCAGTTATCATTCTCAACGAAATCATAGCAACTATAATACGTATGGTGGGGGATCCATGCAATCTGGTTCATGGGATAGAAATAATCAAGGAAGGGAAGAATTTGAATCATGGAGTCCGGAGAATAGTCCAACTAGAAATCCTAGGTATGTTCCAGGTAGAAATGTTCAAGAGTCAAGAATGAATCATGTTAGAAATCATAGACCTGAATGGTCAAGGCAGCGGGGTTCTTCTGGACACTGGGACCCTGGTAGTGGTAGGCATGGGAACAAAAGGTGGCATGATCAGAGACGTTGA 3141 0.4212 MDVWNDDFTELETGSSVESFQRFLVSQKELFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVHYMQSVFSIKDTVSKKESREISALFGVTVTQVRDFFTSQRSRVRRLVQLSRERALRSNSCEESNDGQINSDPLRPINPAPLNSAGPTNSEEASCSTQEAALSDLDDLDKQFVENIFSLMQKEETFSGQERLMEWILSIQNFSVLLWFLTRGGAMTLVTWLSTAAVEEQTSVLLLILKVLCHLPLHKALPTHISAILQSVNRLRFYRTSDISNRARILLSKWSKLLARNQAIKKPNGVKPSGDSKKDIMLSQRQAYLLSYFHANIGQIMGSGSWHSNIDVPVSLLLNIFISAGNFRKLESPVKLLQPSSDDSNKKPTLGVSSSRILGASLSLSSEARERRKVQLVEQPGQKSVSRSPQVARAGSVSQGRPMSADDIQKAKMRALFMQSKYGKTGSSKESKDAKIDGLNKPQTNQASIAICSSKVPVPPKIEEDKKPLLLPSKTTNRLDASYSKPKMDLKEPLWEKCKRVQIPWKTPAEVKLKDSWRVGAGANSKEVDAQENRNRRDKESIYHSVQEMPSNPKEPWDLEMDYDDTLTPEIPIEQLPDGDGAEIAVSPNQVATHAIHGVASTSSTVNAATAEPDLELLAVLLKNPELVFALTSGQAGSIPNQETLKLLDMIKRGTVNNSGLSENTNGNYGMSAKAPEKVEVSLPSPTPSSDPRTSGWSTEAPKNPFSRRSSAPDRAIHNSAAVVTTNLVSQIPITSTTVRQQPTVVAPSSKQLTSRTVSPYSLPHATNIIPEKQSSLALSSVHASSDISLTMKNIITANGPSVNLPGAHSSLAMRADGTSNVKPVPNLSLQEGLSNSYPQSFMLASPTPSHSATQQQRHPHLLHQAHYTEPSYRNTVHSYPPQIEKSGPVSDLWRVRQDVSSSYHSQRNHSNYNTYGGGSMQSGSWDRNNQGREEFESWSPENSPTRNPRYVPGRNVQESRMNHVRNHRPEWSRQRGSSGHWDPGSGRHGNKRWHDQRR. 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05442 1046 MobiDBLite consensus disorder prediction 426 444 - -
Seca1g05442 1046 SMART HOX_1 68 130 IPR001356 GO:0003677
Seca1g05442 1046 MobiDBLite consensus disorder prediction 1008 1023 - -
Seca1g05442 1046 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 106 1029 - -
Seca1g05442 1046 MobiDBLite consensus disorder prediction 949 1046 - -
Seca1g05442 1046 MobiDBLite consensus disorder prediction 983 1000 - -
Seca1g05442 1046 Gene3D - 68 125 - -
Seca1g05442 1046 MobiDBLite consensus disorder prediction 569 604 - -
Seca1g05442 1046 MobiDBLite consensus disorder prediction 138 172 - -
Seca1g05442 1046 MobiDBLite consensus disorder prediction 416 452 - -
Seca1g05442 1046 MobiDBLite consensus disorder prediction 576 591 - -
Seca1g05442 1046 MobiDBLite consensus disorder prediction 949 976 - -
Seca1g05442 1046 SUPERFAMILY Homeodomain-like 68 130 IPR009057 -
Seca1g05442 1046 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Seca1g05442 1046 MobiDBLite consensus disorder prediction 704 760 - -
Seca1g05442 1046 MobiDBLite consensus disorder prediction 730 753 - -
Seca1g05442 1046 MobiDBLite consensus disorder prediction 704 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05442 Seca-Chr1 158216927 158226014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05442 1 757 Homeobox Transcription Factor Family AT4G02560 48.554 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05442 - - gmx:100806633 1555.04