Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05438 ATGGTGGAGAGGAGGAAGCCTCTAGTACTGTGTTCCACCAAACATGTCATCAATTCCTTATTGGGGCCTTCCACTTCCACTCCTCCAAGTAACGACCATGAATCTTGCTCCAGTTTCCACTTACCCGTTGGGATTCTCCGATTCTCCAACCAATCTCAATTCCCTTCTCTTGATCACTCTTCACTCATCGGCCTCTCCACTTCAATTCTCAAAAGGCTTTCTATTACTTCAGGTTCACCGGTTCTGGTCAAGAATGCTGAGATGAACATACAGAGAATTGCAGTGGCCGTTGCTCTGGATCCTCCTGGTACCACACCTGATATAGAGTCACCCCCTTCTTCTCGAATAATGCTTGTTTTTCCTTCTTGTGATTTCCCTCGTAGTGGCCCCTTGTTGTTAAATGATGAAGTTGCTTATTTATCTCCTCTTTTGGCCTTTAATCTTAACTTGCACATTGCATGCTTAAAATCCATTCTGAGACATGGGCAAGACGCCTTAGAATCTTATTTTAAGCCTCGAGGTCAAGGGGATGATGAGGATGCTGCTAAAAGCATTAAGGATTCTGTCATCAACATGGAATTGGCACCTATTTTTCAACCTCCAAGATTTGCCTCACTTCTGAGGGTTGCTTTTGTGAAGATACCTGAATGTGGCATCCTTGAGTCTATTAGAGCAAGTTCACCTATTGAATCCCAAGAACGTCAAGACATGATTGACTTGGCATTGCAAAAGTATTTTGAAGTCGATAGGTATTTGTCAAAAGGAGATGTTTTCGGAATTAACATTAGTTGGAACTGCAATTCTGCCATTTGCATTGCATGCAACCAAAAACTGCAGAAGAAAAATGACAACCTTATATGTTTCAAGGTCATTGCTATGGAACCATCAGATGAACCGGTTCTTCGTGTCAATAAAACCTTAACTGCTCTGGTGCTAGTAGGGAGTTCCCCATCCGCCCTTCCTCCGGATTTGTTAGTTGCTGGACCAGAAGGGCCTGTGCCTTTGCAAAGGGACACAGTAAAGATCTTGGCTTCAATACTTGCACCAACTTTATGTCCATCAGCACTTTCTTCCAAGTTCAGAGTTTCAGTTCTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTCGTTAGATATGTTGCTCGTAGATTGGGCCTGCACGTGGTGGAATATAACTGTCATGATCTAATGGTATCTGACAGAACTTCTGTTGCTCTAGCTCAAGCTTTCAAGACGGCTCGAAGATACTCACCAACAATACTTCTTCTTCGTCATTTTGATGTTTTTCGAGATCCGCATTCGCCTGAGGGTTCACTAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTCAGTGAACATGGTGATAGTAACTCCCTAATGAAATCAAACGGAGAATTGAATTGCAAAGATATTTACTTTTACAGCATGCTGGTGAAGGTGGAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTGTTGATTGCAGCTGCTGACAGTTCAGAAGGTCTGCCTCCAACTATCAGACGCTGCTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAGCAAAGGGCTGAGATGCTATTCCAGTCACTGCAAAGTATTTCTGGACTCCTCTCTAATACTGATTCGGAGGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGCTTTATGCCCAGGGATATGAGTGCTTTAATTGCTGATACTGGTGCCAACTTATTTCCCAAGAGCAATGCTGAAGTGGACAAGCATGGACCTGAAGATGTAGATAGTTCTCTTAGTTCCAAGGTGGCAGAGGACAACAATGAGTTAAAAGCTTCACCTGGGATTCCTGGGAAGGAAGACATGATGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTAGGCACTCCAAAGGTTCCAAATGTGAAATGGGAAGATGTTGGTGGGCTCGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTTCATCTGGGTTACGCAAGCGATCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAATGCTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTATATAGGAGAGTCTGAGAAGAATGTTCGAGACATTTTCCAAAAGGCCAGATCAGCACGGCCATGTGTAATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGTGCTTCTGGAGACTCTGGGGGTGTTATGGATAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTTTGCGCCCTGGTCGATTTGATAAACTGCTATATGTTGGAGTTAACTCTGATGCATCTTACCGGGAGCGGGTACTGAAAGCTCTTACCCGAAAGTTCAAACTGCATGAAGATGTTTCACTTTATTCTATAGCAGAAAAATGTCCACCAAACTTCACCGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCACGCCGCAAAGCGCAAGGTTTTAAGTGCAAATCCAGAGTCTTCCAGCCAAGATAATGATGCAGATTCTGTTGTTGTTGAATACAATGATTTTGTCCAGGTCTTAGCAGAACTGCCACCTTCCCTCTCCATGGCTGAGCTTAGGAAGTACGAGAAACTGAGAGATCAATTTCAAGGCACCTCTAAATGA 2817 0.4313 MVERRKPLVLCSTKHVINSLLGPSTSTPPSNDHESCSSFHLPVGILRFSNQSQFPSLDHSSLIGLSTSILKRLSITSGSPVLVKNAEMNIQRIAVAVALDPPGTTPDIESPPSSRIMLVFPSCDFPRSGPLLLNDEVAYLSPLLAFNLNLHIACLKSILRHGQDALESYFKPRGQGDDEDAAKSIKDSVINMELAPIFQPPRFASLLRVAFVKIPECGILESIRASSPIESQERQDMIDLALQKYFEVDRYLSKGDVFGINISWNCNSAICIACNQKLQKKNDNLICFKVIAMEPSDEPVLRVNKTLTALVLVGSSPSALPPDLLVAGPEGPVPLQRDTVKILASILAPTLCPSALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMVSDRTSVALAQAFKTARRYSPTILLLRHFDVFRDPHSPEGSLNDQRGNTSEVASVIRKFTEPVSEHGDSNSLMKSNGELNCKDIYFYSMLVKVEKNAEKTSGHQVLLIAAADSSEGLPPTIRRCFSHEISMGPLTEEQRAEMLFQSLQSISGLLSNTDSEGFVKEIVGQTSGFMPRDMSALIADTGANLFPKSNAEVDKHGPEDVDSSLSSKVAEDNNELKASPGIPGKEDMMNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAEKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSSQDNDADSVVVEYNDFVQVLAELPPSLSMAELRKYEKLRDQFQGTSK. 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05438 938 FunFam Peroxisomal biogenesis factor 6 650 839 - -
Seca1g05438 938 PANTHER AAA-FAMILY ATPASE 56 935 - -
Seca1g05438 938 Gene3D - 826 912 - -
Seca1g05438 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 590 IPR027417 -
Seca1g05438 938 Gene3D - 333 550 IPR027417 -
Seca1g05438 938 Gene3D - 650 927 IPR027417 -
Seca1g05438 938 Pfam ATPase family associated with various cellular activities (AAA) 692 824 IPR003959 GO:0005524|GO:0016887
Seca1g05438 938 Pfam ATPase family associated with various cellular activities (AAA) 364 528 IPR003959 GO:0005524|GO:0016887
Seca1g05438 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 932 IPR027417 -
Seca1g05438 938 SMART AAA_5 360 533 IPR003593 GO:0016887
Seca1g05438 938 SMART AAA_5 688 828 IPR003593 GO:0016887
Seca1g05438 938 FunFam Peroxisome biogenesis protein 6 826 912 - -
Seca1g05438 938 MobiDBLite consensus disorder prediction 594 608 - -
Seca1g05438 938 ProSitePatterns AAA-protein family signature. 795 813 IPR003960 GO:0005524|GO:0016887
Seca1g05438 938 MobiDBLite consensus disorder prediction 591 628 - -
Seca1g05438 938 CDD RecA-like_PEX6_r2 664 823 IPR047533 -
Seca1g05438 938 FunFam Peroxisome biogenesis protein 6 333 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05438 Seca-Chr1 158158478 158165443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05438 658 895 Calmodulin-binding Proteins AT3G56690 39.331 5.14e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05438 K13339 - gmx:100820183 1506.5