Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05437 ATGGTATCCCTCAAACTGCAGAAGCGGCTGGCCGCAAGCGTTCTCAAATGCGGAAGGGGGAAGGTTTGGCTTGATCCCAATGAAGGCAATGAAATCTCCATGGCCAATTCTCGTCAAAACATTAGGAAGTTGGTTAAGGATGGGTTTATCATCAGAAAGCCAACCAAGATTCACTCCCGTTCACGCGCTCGCAGGATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACAAGAGAGGCAAGGCTTCCCACCAAAATACTTTGGATGAGGAGGATGCGTGTGCTCAGAAGATTGCTTCGTAAGTACAGGGAATCAAAGAAAATTGACAAACACATGTACCACGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTCTTAATGGAGAGCATTCACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACTTTGTCTGATCAGTTTGAGGCGAAGCGTGCAAAGAACAAGGCTAGCAGGGAAAGGAAAATCGCTAGGAGGGAGGAGCGCTTGGCCCATGTGAGTTCCTTTAGTGTCTTGAGAATCCATTTAATTGTATATTTCATGATTTTAATATTTTTCTAA 615 0.452 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAHVSSFSVLRIHLIVYFMILIFF. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05437 204 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Seca1g05437 204 FunFam Ribosomal protein L19 1 56 - -
Seca1g05437 204 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Seca1g05437 204 FunFam Ribosomal protein L19 57 190 - -
Seca1g05437 204 Gene3D - 57 188 - -
Seca1g05437 204 MobiDBLite consensus disorder prediction 57 85 - -
Seca1g05437 204 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Seca1g05437 204 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca1g05437 204 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Seca1g05437 204 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca1g05437 204 PANTHER 60S RIBOSOMAL PROTEIN L19 1 184 IPR039547 GO:0003723|GO:0003735|GO:0022625
Seca1g05437 204 MobiDBLite consensus disorder prediction 57 79 - -
Seca1g05437 204 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05437 Seca-Chr1 158155001 158157563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05437 1 183 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 90.710 1.47e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05437 K02885 - rcu:8278777 347.436