Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05433 ATGGAATTGTACGGTCGAAACCCGGCAAGGAATGGGTCGAACCCGGGGAATCAACCCGAATGGCGCTCACCAGCCGGCGATACTAGTCTCGAAGAATCCATGTGGCACTTGACGCTCAGTAGCAGCGAATCGTACCCGGAGCGACCCGGTGTTCCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTAGCAGGTGTCGGTACAGTCATCCTCGTGATCGAGCTGCGGTTGCGGCAGCTGTAAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAGCCTCCATGTCAGTATTATTTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTCCACCATCCGAAACATGGAGGTGGATCTTTGAGCCAAGCTCCTCTAAATATTTATGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAATGTAAATTTGGTATAACTTGTAAATTCCATCATCCTCAAACTGCTGCTGGCACATCAATGCCGGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACAGTTCCCCTGCCTGACCAGTATGGGGGAGCATCCACGAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTACAGGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAATCCGTACTCGGCACCTGTAAGTCCTGTATTATCTCCTGGTGCTCAACCTGCTGTCGGGGCTACTTCTCTATATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCGTACACTCCTCTTCCCTCTTCTACTGGCCCTTTGGGCAGTAACCCAAAGGAACAAGTGTTTCCTGAAAGACCTGGTGAACCTGAATGCCAATATTATCTCAGAACAGGGGATTGTAAATTTGGGTTAGCTTGTCGATATCATCATCCTCGAGACCGGGTAACACAGCCACTTCTCAGCCCCATTGGTCTTCCTCTACGTCCAGTAAGTATACTTATTCATTCAATTTGA 1050 0.4914 MELYGRNPARNGSNPGNQPEWRSPAGDTSLEESMWHLTLSSSESYPERPGVPNCVYYMRTGFCGYGSRCRYSHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQTAAGTSMPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWNPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSTGPLGSNPKEQVFPERPGEPECQYYLRTGDCKFGLACRYHHPRDRVTQPLLSPIGLPLRPVSILIHSI. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05433 349 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Seca1g05433 349 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Seca1g05433 349 ProSiteProfiles Zinc finger C3H1-type profile. 297 325 IPR000571 GO:0046872
Seca1g05433 349 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Seca1g05433 349 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Seca1g05433 349 SMART c3hfinal6 297 324 IPR000571 GO:0046872
Seca1g05433 349 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Seca1g05433 349 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Seca1g05433 349 Gene3D - 47 125 - -
Seca1g05433 349 Gene3D - 286 333 - -
Seca1g05433 349 Gene3D - 126 175 - -
Seca1g05433 349 MobiDBLite consensus disorder prediction 1 27 - -
Seca1g05433 349 MobiDBLite consensus disorder prediction 278 297 - -
Seca1g05433 349 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Seca1g05433 349 MobiDBLite consensus disorder prediction 10 24 - -
Seca1g05433 349 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Seca1g05433 349 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Seca1g05433 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Seca1g05433 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 324 IPR000571 GO:0046872
Seca1g05433 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Seca1g05433 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Seca1g05433 349 SUPERFAMILY CCCH zinc finger 301 326 IPR036855 GO:0046872
Seca1g05433 349 PANTHER PROTEIN PHOSPHATASE RELATED 33 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05433 Seca-Chr1 158132660 158136329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05433 1 344 C2H2 Transcription Factor Family AT5G18550 51.240 2.04e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca1g05433 zf-CCCH 7.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05433 - - lja:Lj5g3v1665190.1 654.055