Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05425 ATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACAGATAAAGGGCAATTTCATTGTGATGAATGTGGGATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTACGAAATGTGGCTCTTGCTATTCAATGAGCTTGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTCCTGCCCTGTCTGTTTTGAGTACCTATTTGATTCAATAAAAGGAAGTACAATTTTGCGGTGTGGACACACAATGCATACTGAATGCTATCAAGAGATGGCTACTCAAAATCAATATCGTTGTCCTATCTGCTTGAAGACAATATTTGATATGTCTCAGAACTGGGAACATTTAGATCGAGAGATTGAAGCTGCTCCTATGCCCAACGAGTGTAATTTTGAGGTTTCAATTCTTTGCAATGATTGTAACGCTACCAGCACAGTCTCCTTTCACATATTTGGTCACAAGTGCAGACAGTGCAGTTCGTATAACACCCGTCGGATTTCGACACCCGCACAGCAGTGA 537 0.4041 MGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRDKFFHCTKCGSCYSMSLQNNHSCVENSMKSSCPVCFEYLFDSIKGSTILRCGHTMHTECYQEMATQNQYRCPICLKTIFDMSQNWEHLDREIEAAPMPNECNFEVSILCNDCNATSTVSFHIFGHKCRQCSSYNTRRISTPAQQ. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05425 178 Gene3D - 138 177 - -
Seca1g05425 178 ProSiteProfiles Zinc finger RING-type profile. 66 108 IPR001841 -
Seca1g05425 178 Pfam Zinc finger, C3HC4 type (RING finger) 66 108 IPR018957 GO:0046872
Seca1g05425 178 CDD RING-H2_Pirh2-like 66 108 - -
Seca1g05425 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 137 IPR013083 -
Seca1g05425 178 Pfam Zinc-ribbon 113 170 IPR039512 -
Seca1g05425 178 FunFam RING finger and CHY zinc finger domain-containing protein 1 136 178 - -
Seca1g05425 178 SUPERFAMILY RING/U-box 65 115 - -
Seca1g05425 178 SUPERFAMILY Zinc hairpin stack 2 59 IPR037275 -
Seca1g05425 178 SMART ring_2 66 108 IPR001841 -
Seca1g05425 178 ProSiteProfiles Zinc finger CTCHY-type profile. 1 65 IPR017921 -
Seca1g05425 178 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05425 Seca-Chr1 158066638 158071391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05425 1 174 C2H2 Transcription Factor Family AT3G18290 43.820 1.29e-38 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05425 K10144 - gmx:100818374 333.569