Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05424 ATGAGTGGTTCTCCGAGACAGAGACAACACTCACACACTGTTCCTGCATATAAAGAAGAACAAGAAGCATCACAACTAGCTCGACCATGTGACTATTGTGAACACTCCACAGCAGTTCTCTACTGCAGAGCTGACTCAGCAAAGCTCTGTTTCTCTTGTGATCGTGAAGTTCACTCCACCAATCAGCTTTTCTCAAAGCACACTCGCACTCTTCTCTGTGATGCCTGCGATGATTCCCCTGCTACCATACTCTGTTCCACTGAAACCTCTGTTCTCTGCCAGAACTGTGACTGGGAAAAACACAAACTTTCCCTTTCCTCCGTGCATGAAAGAAGGCCTATTGAAGGGTTCACTGGGTGCCCTTCTGTTACTGAACTCTTATCCTTTGTGGGGTTCCAAGATTTAGGGAAAAAAGCGCTGCTTTCACCTCAGGAAAGTGGAGTTGCAGGGGATGGGTTTCTGGGGTATGCGATTGAAGAAGGGCTTTCTGATTTGTTTGTTTGGGATGCTCCTTCTGTTGTTAGTCTTGATGATTTGATTTCTTCTTCTGCTTCTTCTCATAACTATCAGGCCATGGAGGTTCCTCCTTTGCCCAAGAATCGTAATGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGTGAACTAACAAAGTCTGAGCCCTTGGATGAACCTGAACAGTATGTGCAATCAGGAAATTTGTCCACAGGTTATGAACGTGACATAGAGAATGACATCTTTCCTGCTCATGAGTGGCATAGAGAAAGCAGTGAGACTATGTATCAAGTTGTTCCTCTTGATACATCATTAAGAGCTTATAATGAAGAAATTCCAGTTAAACATTCTACTCCTGCTGTTGGGGAGACTCATGCCTATGGAAACAATGGTAAACCTTCAAATTCTCTCAAGTCTGAAACCTTATCAACTGCCCCTAAAGCTGTGCCACATGAGGTAGCAAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACAAGAAGAGCTTGGATATTACAAAATTTACCTAAATATGTGCTTCCAAGCAGTTCAAGAACAATGAATGCTGAGGGGGCAATGGGGAAAAGGGAACAAATCAAAGTGTTAAGTGCAAAAGCAAATGGGGATAGTACTGGAATATTACAAACAAATGGAGTACATACTGCGGTTGGAAATGGAGCAGAAAAGATACATCGGAGAAGGGAGCATTTTACTAGCTACTGCACTCTTCTGTAG 1254 0.433 MSGSPRQRQHSHTVPAYKEEQEASQLARPCDYCEHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTETSVLCQNCDWEKHKLSLSSVHERRPIEGFTGCPSVTELLSFVGFQDLGKKALLSPQESGVAGDGFLGYAIEEGLSDLFVWDAPSVVSLDDLISSSASSHNYQAMEVPPLPKNRNAACGRHREEILSQLRELTKSEPLDEPEQYVQSGNLSTGYERDIENDIFPAHEWHRESSETMYQVVPLDTSLRAYNEEIPVKHSTPAVGETHAYGNNGKPSNSLKSETLSTAPKAVPHEVASQERDSALLRYKQKKKTRRAWILQNLPKYVLPSSSRTMNAEGAMGKREQIKVLSAKANGDSTGILQTNGVHTAVGNGAEKIHRRREHFTSYCTLL. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05424 417 ProSiteProfiles Zinc finger B-box type profile. 68 114 IPR000315 GO:0008270
Seca1g05424 417 ProSiteProfiles Zinc finger B-box type profile. 25 72 IPR000315 GO:0008270
Seca1g05424 417 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g05424 417 MobiDBLite consensus disorder prediction 296 311 - -
Seca1g05424 417 SMART bboxneu5 73 114 IPR000315 GO:0008270
Seca1g05424 417 SMART bboxneu5 25 72 IPR000315 GO:0008270
Seca1g05424 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 29 341 - -
Seca1g05424 417 CDD Bbox1_BBX-like 29 72 - -
Seca1g05424 417 MobiDBLite consensus disorder prediction 288 323 - -
Seca1g05424 417 Pfam B-box zinc finger 28 70 IPR000315 GO:0008270
Seca1g05424 417 Pfam B-box zinc finger 72 114 IPR000315 GO:0008270
Seca1g05424 417 CDD Bbox1_BBX-like 72 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05424 Seca-Chr1 158056527 158060081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05424 19 341 C2C2-CO-like Transcription Factor Family AT2G47890 40.244 4.49e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca1g05424 zf-B_box 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05424 - - gmx:100777428 493.041