Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05414 ATGGAAGCCGTAGCAAGAGAGAGGCTTAGCCCTGCTCCTCACTCATCCTCCGGTGACCGAGGTGGGGACGGTGAATTGTATTGTGAACTGTGGCATGCATGCGCGGGGCGAGTGTATGTTCCTGAGGTTGGAGAGAAGGTATTCTACTTGCCACAGGGTCACTTGGAGCAGGTTGCTGCTTTTACTCAACATCAGCAAGATGGTCACATGGAAATTCCAGTATATGATTTGCCTTTTAAGATCTTATGCAGGGTTATGTCTGTTCAGTTAAAGGCTGAAGCTTACACAGATGAAGTTTTTGCTCAAGTTACATTGCTTCCGGAGTCCAAGATTAAAACTGATTATTGCTTTGGATTTTCGCAGCAAGATGATCTTAGTTCAGAAGACACTAGTGAGATACCTCGCAGAACTAAACCCTACTCTTTTAGCAAGATACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGCGACATGCAGATGAATGCTTCCGCCCTCTGGTTGACATGACTCTTCAAACACCAATGCAAGAGCTGGTTGCTAAGGACTTACATGGGTTTGAGTGGCATTTTCGGCATATATATCGCGGTCAGCCGAAAAGACACTTGCTGACTAGCGGTTGGAGCACATTTGTTAATTCAAAAAAACTTGTCGCTGGAGATGCATGCATTTTCGTTAGGGGAGACAATGGAGAAATTCGTGTTGGGATTCGTCGAGCAACGAAACAACACAACAATGTAGCCACATCTTCATCTCTGATATCAGGCCATAGCATGCAACTTGGAATTTTGACCAGTGCTTCCCATGCTGTTGCCACAGGATCCATGTTCAGTGTCTATTACCGCCCTTGGACGAATCCCTTTGAATTTATTATTCCTGTGAAAAACTACATGAAGTCAACTGAAGTGGACTATTCAATTGGAACGAGAGTACAAACGCTGCTACAAGTTGAAGAATCTACAAGAAGATATGCAGGTACTATAATTGGTATTGAAGATATCGATAAGATTAGGTGGCCTGGTTCAAAATGGAAATGTCTCAAGGTGCAATGGGATGCCATACTGAATACGTATGTTAATCCTGAGAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAACCTGTCAAGAATAAGCGCGTTCCTGTTCTCCCCCAACCAAACAAGGCACGTGCACTTAACCCGCCATTGCCTGGATTAAATGGCTTTGCCAATGATGGCACAGTTCAGAATTCAGCCAGGCCTGCATCTCAGAGAGTGGATAGGGAATTGCAAGGTCAAGATTACAATGGCTTATGTTCTCCACAACCTTTGCAAAAGCCACTATCAACAGATGTCCTCCTCCCAATGAAGAATCCAAATCAGCTTCCCTCTTTTATGCAAGACCATCTTCACCAATCTCTTGGAAGCTCAGTGTCATTTTCACATGAAGACATATCAACTTCCAATTCAAATGTGAAATCCACTCTTTCTGAATCCCAGGGATGGCCTCCCTCTGAATCTAAAGATGAAAATGATTTTACTTTTGGCCAACCTGGCAGCAGCAGCAGATTCAAACTTTTTGGGGTTAGCTTGATTGATAGGCAACCGGAGCTCCCTTCACCACAATTTTCTACGTTTAGCAAAATTTCTTGTCCTCCAATATGTGTTACCGCTGGGAAAACGTGCAAGAAGTGTCGCTCTGTTAATAGGAGTTGCACAAAGGTGCTTAAGATGGGAACTGCTCTTGGAAGAGCGATTGACCTCACCCGTTTAGGTGGATATGATGAGCTCATTTCTGAACTCGACCGGATGTTTGGTTTTGGAGGAAGCTTAATCAATGGAAGCAGCGGATGGCATGTGACCTGCATAGATGATGATGGAGATATGATGCTATTAGCGGATTACCCTTGGCAGGATTTCCAATCCGTGGTGCAAAAGATGATCATATGTCCCAAGGATGGTACTGACAATCCCAATCCAAGCTCCTCAGCAGATCCTTCAAAGCTTTAG 2001 0.4443 MEAVARERLSPAPHSSSGDRGGDGELYCELWHACAGRVYVPEVGEKVFYLPQGHLEQVAAFTQHQQDGHMEIPVYDLPFKILCRVMSVQLKAEAYTDEVFAQVTLLPESKIKTDYCFGFSQQDDLSSEDTSEIPRRTKPYSFSKILTPSDTSTHGGFSIPKRHADECFRPLVDMTLQTPMQELVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNSKKLVAGDACIFVRGDNGEIRVGIRRATKQHNNVATSSSLISGHSMQLGILTSASHAVATGSMFSVYYRPWTNPFEFIIPVKNYMKSTEVDYSIGTRVQTLLQVEESTRRYAGTIIGIEDIDKIRWPGSKWKCLKVQWDAILNTYVNPERVCPWWIEPLEPVKNKRVPVLPQPNKARALNPPLPGLNGFANDGTVQNSARPASQRVDRELQGQDYNGLCSPQPLQKPLSTDVLLPMKNPNQLPSFMQDHLHQSLGSSVSFSHEDISTSNSNVKSTLSESQGWPPSESKDENDFTFGQPGSSSRFKLFGVSLIDRQPELPSPQFSTFSKISCPPICVTAGKTCKKCRSVNRSCTKVLKMGTALGRAIDLTRLGGYDELISELDRMFGFGGSLINGSSGWHVTCIDDDGDMMLLADYPWQDFQSVVQKMIICPKDGTDNPNPSSSADPSKL. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05414 666 ProSiteProfiles B3 DNA-binding domain profile. 142 245 IPR003340 GO:0003677
Seca1g05414 666 FunFam Auxin response factor 308 380 - -
Seca1g05414 666 Pfam B3 DNA binding domain 142 244 IPR003340 GO:0003677
Seca1g05414 666 Gene3D - 140 245 IPR015300 -
Seca1g05414 666 Pfam AUX/IAA family 483 646 IPR033389 -
Seca1g05414 666 SMART B3_2 142 245 IPR003340 GO:0003677
Seca1g05414 666 CDD B3_DNA 141 243 IPR003340 GO:0003677
Seca1g05414 666 MobiDBLite consensus disorder prediction 1 21 - -
Seca1g05414 666 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 649 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca1g05414 666 MobiDBLite consensus disorder prediction 478 512 - -
Seca1g05414 666 ProSiteProfiles PB1 domain profile. 567 650 IPR000270 GO:0005515
Seca1g05414 666 Gene3D - 308 381 - -
Seca1g05414 666 Gene3D - 563 654 - -
Seca1g05414 666 SUPERFAMILY CAD & PB1 domains 571 643 - -
Seca1g05414 666 Pfam Auxin response factor 271 352 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca1g05414 666 FunFam Auxin response factor 140 245 - -
Seca1g05414 666 SUPERFAMILY DNA-binding pseudobarrel domain 137 273 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05414 Seca-Chr1 157938046 157947624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05414 566 659 B3 DNA Binding Superfamily AT5G62000 44.681 2.85e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca1g05414 AUX_IAA 2.2e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05414 - - lja:Lj1g3v4764520.2 954.51