Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05409 ATGGCGGAAGGGAAGGAAGAGAGCAAATCTAGCGAAGAGAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACGGAAGCGGAACTGCTTGCAATGTTCAAGGAGTTCGCTTTGGTCGACGAAGTCAACATCATCAAGGACAAAACCACACGCGCTTCTCGAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGAAGAGGCTGATAAGGCCGTCAATGCGTGCCATAATAAGAAAACGCTACCAGGGGCATCTAGCCCATTGCAAGTAAAGTATGCAGATGGCGAATTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCGAAGAATGTTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAATACGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCCTTGCTGCTTTAGAGGCAATCAATGGAAAGCATAAAATGGAGTATTTTGGACCTTCAAGCGGCATTCAGCCACAAAATCCTATTGTGGACTTGCACAAGCATCTCATTCATTCAACACGAATTGGATTAGGATTTACTAAAAAAGTACATTTCCTCTTGGCAACCAATCTTCAAGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAAAAAGCACAGTCCCAAGCTTCTAATGTACCACATGCTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAAGTTATGGGCTCATGCCATACCGCATGCCACCAATGCAGAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCAAGGAAATGCATTGCGGCCTGATCTCGGTCCCAATATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTACGTTAGCTCATATCCTGCTGTGCCAGGCCTACAACATCCAATGGCGTATCCTGCAGGAATGATTAGTCCAAGGCCCATGAGCAGTCCTCCTGGTTCTGTCTCACCTGCTGGTGGAAATAACAACTCCGCCACATCTTCAGGGGCCAGCAAAAATTCCGGGGGTCAGGTTGAAGGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCAACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCCCAGAAGCTGCTCAATCTGCCATTAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACAGGGCAAACCTTACTGA 1428 0.4384 MAEGKEESKSSEESVKLFVGQVPKHMTEAELLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEYFGPSSGIQPQNPIVDLHKHLIHSTRIGLGFTKKVHFLLATNLQGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHADSQHPSLFGALPMGYVPPYNGYGYQAPGSYGLMPYRMPPMQNQPGFHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVSSYPAVPGLQHPMAYPAGMISPRPMSSPPGSVSPAGGNNNSATSSGASKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKQGKPY. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05409 475 SMART rrm1_1 104 172 IPR000504 GO:0003723
Seca1g05409 475 SMART rrm1_1 391 464 IPR000504 GO:0003723
Seca1g05409 475 SMART rrm1_1 16 92 IPR000504 GO:0003723
Seca1g05409 475 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Seca1g05409 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 166 IPR000504 GO:0003723
Seca1g05409 475 Gene3D - 2 100 IPR012677 -
Seca1g05409 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Seca1g05409 475 MobiDBLite consensus disorder prediction 348 387 - -
Seca1g05409 475 FunFam RNA-binding protein BRN1 357 467 - -
Seca1g05409 475 Gene3D - 101 236 IPR012677 -
Seca1g05409 475 Gene3D - 361 467 IPR012677 -
Seca1g05409 475 MobiDBLite consensus disorder prediction 237 251 - -
Seca1g05409 475 MobiDBLite consensus disorder prediction 360 381 - -
Seca1g05409 475 CDD RRM1_2_CELF1-6_like 16 92 - -
Seca1g05409 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 390 468 IPR000504 GO:0003723
Seca1g05409 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Seca1g05409 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 166 IPR000504 GO:0003723
Seca1g05409 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 392 462 IPR000504 GO:0003723
Seca1g05409 475 SUPERFAMILY RNA-binding domain, RBD 103 470 IPR035979 GO:0003676
Seca1g05409 475 FunFam RNA-binding protein BRN1 2 99 - -
Seca1g05409 475 MobiDBLite consensus disorder prediction 231 252 - -
Seca1g05409 475 PANTHER OS02G0815200 PROTEIN 367 472 - -
Seca1g05409 475 CDD RRM3_CELF1-6 392 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05409 Seca-Chr1 157901727 157907436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05409 383 470 Eukaryotic Initiation Factors Gene Family AT1G22760 37.363 1.49e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05409 K13207 - gmx:100813239 755.362