Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05406 ATGAAGATGAGATTTTTCCTTGTTGCTTGTTTGTTAGTGTTTTGTTTACTTGAGGTTTGTCAAGGTGGCAGCCTCAGAAAGAATTTCTATAGGAAATCCTGTCCTCAAGCGGAGCAGATTGTTCAGACCAAAATCAAGCAGCATGTCTCTGCAAGACCCAATTTACCAGCCAAGCTGATTAGAATGCACTTTCATGACTGTTTTGTCAGGGGGTGTGATGCGTCGGTTTTGTTGGAGTCCACTGCCAATAACACTGCAGAGAAGGATGCTATTCCTAATTTATCTCTGTCTGGCTTTGATGTCATAGAAGACATAAAAGAAGCACTTGAGGCTAAATGTCCCGGAATTGTATCTTGTGCTGATATACTAACTTTGGCAACTAGGGACTCTGTTTCTGTCCAAAATAAGCCTATGTGGGAAGTGCTTACCGGTAGAAGAGATGGCACAGTATCCAAAAGTAGTGAAGTTTTGGCCAATATCCCAGCACCTTTCTTTAACTTTGCCCAGCTCAAACAAAGTTTTGCCAATAAAGGGCTTACTTTGCACGACTTGGTTGTATTATCAGGAGCACACACAATTGGAGTAGGGCATTGCAATTTGTTCAGTAACAGGCTTTTCAACTTCAGTGGAAAAGGTGATCAAGATCCTTCTTTGAATCCCACTTATGCCAAATTCTTGAAGAGTAAATGCAAGAGCCTGAGTGACACCACCACAACAGTAGAGATGGATCCCAATAGCTCTGAAAGCTTTGACAGTGACTATTATTCAATCCTTCTCCAGAACAAGGGTTTGTTCCAATCAGATGCTGCCCTTCTAACAACCAAGCAATCTAAAAACATTGTTAATGAATTGGTTAGACAAAACAAATTCTTCACAGAGTTTGCACAGTCAATGAAGAGGATGGGAGCAATTGAAGTCCTCACAGGCACCGCTGGGGAAATTAGGGTTTGTCAAGGAGCCAGCCTTAGAAAAAAATTCTATAGGAAATCCTGTCCTCAAGCGGAGCAGATTGTTCAGACCAAAATCAAGCAACATGTCTCTGCAAGGCCTGATTTGCCAGCCAAGCTGATTAGAATGCATTTTCATGATTGTTTTGTTAGGGGGTGTGATGGGTCGGTTTTGTTGGAGTCCACTGCCAACAACACTGCAGAGAAGGATGCTATTCCTAATTTATCTTTGTCTGGCTTTGATGTCATAGAAGACATAAAAGAAGCACTGGAGGCTAAATGTCCCGGAATTGTATCTTGTGCTGATATACTAACTTTGGCAGCTAGGGACTCTGTTTCTGTCCAATTTAATAAGCCTATGTGGGAAGTGCTTACCGGTAGAAGAGATGGAACAGTATCTAAAAGTAGTGAAGTTTTGGCCAATATCCCAGCACCTTTCTTTAACTTTGCCCAGCTCAAACAAAGTTTTGCCAATAAAGGGCTTACTTTGCACGACTTGGTTGTATTATCAGGAGCACACACAATTGGAGTAGGTCATTGCAATTTGTTCAGTAACAGGCTTTTCAACTTCAGTGGAAAAGGTGATCAAGATCCTTCTTTGAATCCCACTTATGCCAAATTCTTGAAGAGTAAATGCAAGAGCCTGAGTGTCACCACCACAACAGTAGAGATGGATCCTAATAGCTCTGAAAGCTTTGACAGTGACTATTATTCAATCCTTCTCCAGAACAAGGGTTTGTTTCAATCAGATGCTGCCCTTCTAACAACCAAGCAGTCTAAGAACATTGTTAATGAATTGGTTAGACAAAACAAATTCTTCTCAGAGTTTGCACAGTCAATGAAGAGGATGGGAGCAATTGAGGTCCTCTCAGGCTCTGCTGGGGAAATTAGGAGAAAGTGCTCTGTTGTCAACTCTTAA 1866 0.4159 MKMRFFLVACLLVFCLLEVCQGGSLRKNFYRKSCPQAEQIVQTKIKQHVSARPNLPAKLIRMHFHDCFVRGCDASVLLESTANNTAEKDAIPNLSLSGFDVIEDIKEALEAKCPGIVSCADILTLATRDSVSVQNKPMWEVLTGRRDGTVSKSSEVLANIPAPFFNFAQLKQSFANKGLTLHDLVVLSGAHTIGVGHCNLFSNRLFNFSGKGDQDPSLNPTYAKFLKSKCKSLSDTTTTVEMDPNSSESFDSDYYSILLQNKGLFQSDAALLTTKQSKNIVNELVRQNKFFTEFAQSMKRMGAIEVLTGTAGEIRVCQGASLRKKFYRKSCPQAEQIVQTKIKQHVSARPDLPAKLIRMHFHDCFVRGCDGSVLLESTANNTAEKDAIPNLSLSGFDVIEDIKEALEAKCPGIVSCADILTLAARDSVSVQFNKPMWEVLTGRRDGTVSKSSEVLANIPAPFFNFAQLKQSFANKGLTLHDLVVLSGAHTIGVGHCNLFSNRLFNFSGKGDQDPSLNPTYAKFLKSKCKSLSVTTTTVEMDPNSSESFDSDYYSILLQNKGLFQSDAALLTTKQSKNIVNELVRQNKFFSEFAQSMKRMGAIEVLSGSAGEIRRKCSVVNS. 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05406 621 PANTHER PEROXIDASE 25-RELATED 13 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 Gene3D - 28 316 - -
Seca1g05406 621 CDD secretory_peroxidase 25 317 IPR033905 GO:0004601|GO:0042744
Seca1g05406 621 SUPERFAMILY Heme-dependent peroxidases 25 316 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 FunFam Peroxidase 459 599 - -
Seca1g05406 621 ProSitePatterns Peroxidases proximal heme-ligand signature. 481 491 IPR019793 -
Seca1g05406 621 CDD secretory_peroxidase 322 619 IPR033905 GO:0004601|GO:0042744
Seca1g05406 621 FunFam Peroxidase 28 163 - -
Seca1g05406 621 FunFam Peroxidase 161 301 - -
Seca1g05406 621 SUPERFAMILY Heme-dependent peroxidases 322 620 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 Gene3D Peroxidase, domain 2 459 599 - -
Seca1g05406 621 Gene3D Peroxidase, domain 2 161 301 - -
Seca1g05406 621 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 ProSiteProfiles Plant heme peroxidase family profile. 24 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Seca1g05406 621 Gene3D - 325 620 - -
Seca1g05406 621 ProSiteProfiles Plant heme peroxidase family profile. 321 620 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 FunFam Peroxidase 325 461 - -
Seca1g05406 621 PRINTS Haem peroxidase superfamily signature 481 496 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Haem peroxidase superfamily signature 353 367 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Haem peroxidase superfamily signature 433 445 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Haem peroxidase superfamily signature 414 431 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 PRINTS Haem peroxidase superfamily signature 541 556 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 Pfam Peroxidase 338 583 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca1g05406 621 Pfam Peroxidase 41 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05406 Seca-Chr1 157871532 157880837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05406 307 621 Peroxidase AT1G05260 56.604 7.10e-120 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05406 - K00430 mtr:25499574 1009.98