Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05402 ATGCCGGCTGGCCATGGTTTGAGATCTCGCACCAGAGATTCCTTCTCTCGACCATTCAGGAAGAAGGGTACCATTGCCCTCACCACCTACCTCAGGACCTACCACATCGGTGATTATGTCGACATCAAGGTTAACGGCGCCGTCCACAAAGGTATGCCTCACAAGTTCTACCATGGCCGCACTGGACGCGTCTGGAACGTCACCAAACGTGCCATTGGCGTCGAAGTCAACAAGCAGGTTGGGAACAGAATAATCAGAAAGAGGATTCATGTCCGTGTGGAGCATGTGATGCCTTCAAGGTGCACGGAGGAGTTCCGTCTTAGGAAGGTCAAGAATGATCAACTCAAGGCTGAGGCTAAGGCCAAGGGAGAGGTCATTAGCACCAAGAGACAGCCAGAGGGTCCCAAACCAGGTTTCATGGTTGAAGGAGCTACATTGGAGACTGTTACTCCAATTCCTTATGATGTCGTAAATGACCTCAAGGGAGGATACTAG 495 0.5111 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05402 164 Gene3D - 99 156 - -
Seca1g05402 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Seca1g05402 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Seca1g05402 164 FunFam 60S ribosomal protein L21 99 158 - -
Seca1g05402 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Seca1g05402 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Seca1g05402 164 FunFam 60S ribosomal protein L21 1 98 - -
Seca1g05402 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 163 IPR001147 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05402 Seca-Chr1 157845320 157846804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05402 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 84.146 3.09e-105 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05402 K02889 - gmx:100305629 333.954