Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05396 ATGGGTGCCAATTCATTGCTATCCGAGTCGACTCACGATCTCGACGAGCAGATCTCCCAGCTCATGCAGTGCAAACCACTCTCTGAGCAACAGGTTAGAGAATTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGGTATCATTTCTGACTATGAATTTCTTTTTGTATTCAATCTTCTGTTTCAGCATACTAATTAGTTATTCTATCCAGCTCCTTGTGGCACTAAAAGTGAGGTATCCTCAGCGAATTACTATTCTTAGAGGAAATCATGAAAGTCGTCAGATTACTCAAGTATATGGATTTTACGATGAATGCCTAAGAAATATGACATGTGGCTTTGTCAGTGATGATGTGATGGATGTTGTATGGTATGGTAGTGCTAATGTTTGGAAGATCTTTACAGACCTTTTTGATTTTTTCCCATTGACTGCATTGGTTGAATCAGAAATATTCTGTTTGCATGGTGGACTGTCGCCTTCAATTGAGACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTATTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGGATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTCAATCACACAAACAGCCTAAAATTGATTGCTAGAGCTCATCAGCTGGTCATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCTCCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTAGAAGTTGATGATTGCAAGGGCCACACATTTATCCAGTTTGAACCTGCTCCCAGGAGAGGAGAGCCTGATGTCACCCGTAGAACACCTGATTACTTTCTGTAA 990 0.4162 MGANSLLSESTHDLDEQISQLMQCKPLSEQQVRELCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKVSFLTMNFFLYSIFCFSILISYSIQLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRNMTCGFVSDDVMDVVWYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05396 329 SMART pp2a_7 27 313 IPR006186 GO:0016787
Seca1g05396 329 SUPERFAMILY Metallo-dependent phosphatases 10 314 IPR029052 -
Seca1g05396 329 Pfam Calcineurin-like phosphoesterase 55 262 IPR004843 GO:0016787
Seca1g05396 329 PRINTS Serine/threonine phosphatase family signature 118 142 IPR006186 GO:0016787
Seca1g05396 329 PRINTS Serine/threonine phosphatase family signature 253 273 IPR006186 GO:0016787
Seca1g05396 329 PRINTS Serine/threonine phosphatase family signature 275 291 IPR006186 GO:0016787
Seca1g05396 329 PRINTS Serine/threonine phosphatase family signature 197 224 IPR006186 GO:0016787
Seca1g05396 329 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Seca1g05396 329 ProSitePatterns Serine/threonine specific protein phosphatases signature. 119 124 IPR006186 GO:0016787
Seca1g05396 329 CDD MPP_PP2A_PP4_PP6 13 313 - -
Seca1g05396 329 Gene3D - 7 329 IPR029052 -
Seca1g05396 329 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 12 329 IPR047129 GO:0004722
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05396 Seca-Chr1 157779940 157786448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05396 35 259 Calmodulin-binding Proteins AT5G63870 27.737 1.00e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05396 K04382 - gmx:100775812 576.63