Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05392 ATGGCTTCGAGATTCTGGACCCAGGGTGCTAGTGAATCCGAGGAGGAAGAGAGTGATTATGATGAGGAGGAAGAGACTGTAGCCGGTGAATCTGCTAGTCAAGCAGTTACAAGTAGGTACCTTCAAGACAATGCAAGTGACAGTGATGATTCTGATGGCCAAAAACGTGTTGTTAGGTCAGCAAAAGATAAGCGTTTTGAGGAGATGGTTTCCACTGTGGACCAAATGAAGAATGCCATGAAGATCAATGATTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTCACTGAGTCTGAGAAAGTTCCCAATCTTTATATTAAGGCCCTTGTAATGTTGGAGGATTACTTGGCTCAGGCTTTGGCAAATAAAGATGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAATTAAAGAAGAACAATAAGCAATATGAGGAGTTGATTAACAAATGTAGGGAGAATCCAGAGAGTGAGGAGGAAAAAGAGGAAGAAGAGTCGGAGGAGGAAGAATATGAAAGTGATGATGAGGTTATTGATCCTGAGCAGCTTAGGAAGCGAGATCCGAAATCAGATTCGGAAGCCTCTCATTATGAAGATGAAAAGGCAGATGCTGGTGATGGACCTTGGGACCAAAAGCTTAGCAAGAGAGATAGGCTTTTGGATAGACAGTTCATGAAAGACCCTAGTGAGATCACGTGGGACACAGTTAATAAGAAGTTTAAAGAAGTTGTGGCTGCTAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAACAGCTTACCTTCTTAACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTTTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAACCCCGGCCTCAATGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCATAATATGCTGATCATTCTTGATATTCTAGTGCAGTACCCAAACATAGTGGTTGATGATTCGGTGGGGCCGGATGAGAATGAAACTCAGAAAGGGCCTGACTATGATGGACCAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATAGATGCTGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGTGAGTATGTTGAGAGACTCAGGGATGAGCCCATGTTTTTGGTTCTTGCTCAGAATGTCCAGGAGTATCTTGAAAGGGTTGGAGATTTCAAAGCTTCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGGGGTTTATGATGCCATGAGAAAATTGGCTGAGCAGACCGAAGATGGAGATAATGGAGGGGAGGTGAGTGAGGAGTCTAAAGGGTTCGAGGAAACAAGAATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGGCCCGGAAACCCACATTCCCTGAGAATAGCAGAACCCTTATGGATGTATTAGTATCACTGATATACAAATATGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTTATGAGTTCTCAATCGCCCGGGATCTGCTGCTCATGAGTCATTTGCAAGATAATGTTCAGCATATGGACATCTCCACACAGATACTTTTTAACAGGGCTATGTCACAATTAGGTCTGTGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTTTATTCTGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAGAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGTCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGTCTGTGCATCTTATATCTGCCATGCTGCTGGAAGTTCCCAATATAGCAGCCAATGTTCATGATGCAAAACGCAAGGTCATTAGCAAGACTTTCCGTCGTCTGCTTGAGGTCAGCGATAAACAAACATTCACTGGTCCACCTGAAAATGTCAGAGATCACATCATGGCTGCCACAAGGGTTCTTTCTAAAGGAGACTTCCAAAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGGGATGCTGTGCTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCCCTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGATTCTCTGAGTCTGGATCAGCTCACAAAAATTTTTGACCTCTCTGTTGCCCGCACTCACAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAACCAACTGGGTGCATTATTTTCCAAAATGTCGAGCACTCTAGGCTGCAGGCATTGGCATTCCAATTGACTGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCTACAGAGGCAAGGATAGGTGGTGGTGGATTGGATTTGCCTCTAAGGAGGAGAGATGGCCAAGACTATGCTGCTGCTGCTGCAGGTGGTAGTGGAACAGCCTCAGGTGGTAGGTGGCAAGACTTGTCCTTTTCCCAATTAAGGCAAGGCAGTGGACGTGCAGGATATGGTAGTGGTGGTGGAAGGCCATTGGCATTAGGTCAAGCAGCTGGGAGTGGTTATTCAAGAGATCGAACGGGACGAGGAACAGGTTCTGGCTACCAGAGTGCATATGGGAGGACTACTCAAGGTGGTTCAGCATTAAGGGGAGCCCAGGGTGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCATAA 2811 0.4454 MASRFWTQGASESEEEESDYDEEEETVAGESASQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMVSTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDYLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESEEEKEEEESEEEEYESDDEVIDPEQLRKRDPKSDSEASHYEDEKADAGDGPWDQKLSKRDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEIFFSVVSAQFDVNPGLNGHMPINVWKKCVHNMLIILDILVQYPNIVVDDSVGPDENETQKGPDYDGPIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPMFLVLAQNVQEYLERVGDFKASSKVALRRVELIYYKPQGVYDAMRKLAEQTEDGDNGGEVSEESKGFEETRIPTAFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLYEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLISAMLLEVPNIAANVHDAKRKVISKTFRRLLEVSDKQTFTGPPENVRDHIMAATRVLSKGDFQKAFDIIVSLDVWKFVRNRDAVLEMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSVARTHSIVSRMMINEELHASWDQPTGCIIFQNVEHSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGGSGTASGGRWQDLSFSQLRQGSGRAGYGSGGGRPLALGQAAGSGYSRDRTGRGTGSGYQSAYGRTTQGGSALRGAQGDVSTRMVSLKGVRA. 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05392 936 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 IPR000717 -
Seca1g05392 936 Gene3D - 728 797 IPR036388 -
Seca1g05392 936 MobiDBLite consensus disorder prediction 45 61 - -
Seca1g05392 936 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca1g05392 936 MobiDBLite consensus disorder prediction 883 922 - -
Seca1g05392 936 MobiDBLite consensus disorder prediction 195 229 - -
Seca1g05392 936 MobiDBLite consensus disorder prediction 1 61 - -
Seca1g05392 936 Coils Coil 144 191 - -
Seca1g05392 936 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
Seca1g05392 936 SUPERFAMILY "Winged helix" DNA-binding domain 717 792 IPR036390 -
Seca1g05392 936 MobiDBLite consensus disorder prediction 30 44 - -
Seca1g05392 936 MobiDBLite consensus disorder prediction 894 919 - -
Seca1g05392 936 MobiDBLite consensus disorder prediction 135 154 - -
Seca1g05392 936 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 871 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca1g05392 936 MobiDBLite consensus disorder prediction 155 174 - -
Seca1g05392 936 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 931 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca1g05392 936 MobiDBLite consensus disorder prediction 175 194 - -
Seca1g05392 936 Pfam PCI domain 661 789 IPR000717 -
Seca1g05392 936 MobiDBLite consensus disorder prediction 12 28 - -
Seca1g05392 936 MobiDBLite consensus disorder prediction 133 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05392 Seca-Chr1 157728514 157733480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05392 1 936 Eukaryotic Initiation Factors Gene Family AT3G56150 68.466 0.0 1197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05392 K03252 - gmx:100779751 1535.39