Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05363 ATGCGGAGCTTCAGAATGAGGAACATGTTGTCTTGTGTCAATAGAAGGACAAAGAAAAACATCAGAAACAGAAACACACGCAAGCTCACAAACCAAAACTGCATTTCCATTACAAAAGAGTTGCCATGTCTTGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACTGAGGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACCCATGGCGTTCAGCCCTTAGGCAATCTCTATCTCAACCCAGGTTCCATCAACTCCAGAGACACCGGTTTAGGTAATCTCCATACCCTCACGGATGAGCTTGTTCTTGATATTCTTGGGTTTTTGGATGGTACCAGCTTGGGGGTTTTGGCCTCTGTGAGCAAGTCATTTTATGTATTTACCAATCATGAACCCCTTTGGAGGAATCTCGTTTTGGAGAATCTTCTTGGTGGGTTTCGTTACAATGGGTCTTGGAAATCTACTTATGTTACTGCTTGTTACCCTTCATTTGATATCTCTAGTAAAGCTCTTCGGAGTTTCAAAGTTAGAGACTTTTACTCTGATTATCTTTTCCAGAGTTGGCTCTGTGCCAATCTCGAAATGAAGCCTGAATGGTTGGAGAGGGATAATATAGTTAGAAGGAAAGGCCTTTCTGTTGAAGAATTTGTGTTGAATTTTGAGGAGCCTAATAAGCCTGTGTTATTGGAAGGGTGTCTTGATAATTGGGATGCATTGAGAAATTGGGATAGGGATTATTTGGTGAAGTTGTGTGGTGATGTTAAGTTTGCAGTTGGGCCAGTGGAGATGAAGCTTGGGGACTATTTTGAGTACTCGGATCAAGTTAGAGAAGAAAGACCATTGTATTTGTTTGATTCAAAATTTGCTGAAAAAGTTCCAAAATTGGGTTCTGAATATGGTGTTCCAATATATTTTCAGGAGGATTTGTTTGGTGTTTTGGGCAATGAGAGACCTGACTACAGGTGGGTTATTATTGGACCAGCTGGGTCTGGATCCTCTTTCCATGTTGATCCAAATTCAACTTCAGCTTGGAATGCAGTGATCAAGGGTTCCAAGAAATGGATATTATTTCCTCCTGATGTAATTCCACCTGGCGTTCATCCTAGTCCTGATGGTGCAGAGGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACAAAAAATTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGGGAGGTTATCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGTTAAATGTCTTGGATTTTCTTAAACGGCCAAATGCTAGCACACTGGTATCTGGAACAAGGGATCGAGTGAATTTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGCTATTGATGAACTGACCCAAAAACAAGAAGAGGAAAAGATCCAGCAGAGGAAACTTTCCTTCTGGGATTCTGTTACAGATTCAAATGCGGGAGCTTTCAAGTTCTCTTTCTAA 1554 0.4067 MRSFRMRNMLSCVNRRTKKNIRNRNTRKLTNQNCISITKELPCLVEEEEEEEEEETEEGFSIKSSAPSHTHGVQPLGNLYLNPGSINSRDTGLGNLHTLTDELVLDILGFLDGTSLGVLASVSKSFYVFTNHEPLWRNLVLENLLGGFRYNGSWKSTYVTACYPSFDISSKALRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRRKGLSVEEFVLNFEEPNKPVLLEGCLDNWDALRNWDRDYLVKLCGDVKFAVGPVEMKLGDYFEYSDQVREERPLYLFDSKFAEKVPKLGSEYGVPIYFQEDLFGVLGNERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASTLVSGTRDRVNLYDKFKNAIEASFPGAIDELTQKQEEEKIQQRKLSFWDSVTDSNAGAFKFSF. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05363 517 SUPERFAMILY Clavaminate synthase-like 206 450 - -
Seca1g05363 517 Gene3D Cupin 179 437 - -
Seca1g05363 517 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 93 515 - -
Seca1g05363 517 SUPERFAMILY F-box domain 91 162 IPR036047 GO:0005515
Seca1g05363 517 ProSiteProfiles JmjC domain profile. 292 452 IPR003347 -
Seca1g05363 517 SMART fbox_2 99 139 IPR001810 GO:0005515
Seca1g05363 517 ProSiteProfiles F-box domain profile. 93 139 IPR001810 GO:0005515
Seca1g05363 517 Gene3D - 89 164 - -
Seca1g05363 517 FunFam F-box protein At1g78280 187 437 - -
Seca1g05363 517 SMART cupin_9 283 452 IPR003347 -
Seca1g05363 517 MobiDBLite consensus disorder prediction 45 69 - -
Seca1g05363 517 Pfam F-box-like 101 141 IPR001810 GO:0005515
Seca1g05363 517 Pfam Cupin-like domain 217 435 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05363 Seca-Chr1 157417439 157420662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05363 84 441 Glycosyltransferase AT1G78280 39.130 3.56e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca1g05363 Cupin_8 2.6e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05363 - - lja:Lj1g3v4753250.1 901.353