Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05360 ATGACGACAACTGAGGAGAAAGATATCTTGAAGGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCATTGATGGGTCCCTCAGGGAGTGGAAAGACATCTTTGTTAAATCTGCTTGGAGCCAGGGTAAATCATACCACAATAGGTGGCTCTATCACTTATAATGACCAACCATATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTCCTCATCTAACAGTGAAAGAAACATTGACATATGCAGCCCGCCTAAAGTTGCCAAATACATTAACGAAAGAGCAAAAGGAAAAACGAGCTTTAGATGTCATCGTTGAGCTGGGCTTGGAGAGGTGCCAAGAAACTATGATAGGAGGTTCCTTCGTTAGAGGAGTATCCGGTGGAGAGAGGAAGAGAGTTTGTATCGGCAATGAGATCATAATCAACCCTTCTCTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTGAGGATAGTTCAGATGCTACAAGACATAGCAGAGGCTGGTAAAACTGTAGTGACAACAATACATCAACCATCAAGCAGACTCTTCCATAAATTCGATAAGTTGATCCTTCTAGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCGGAAGCAATGGACTACTTCCAATGCATAGGGTGTACGCCTCTTATTGCCATGAACCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACGTAAACGATATTTCTGTACCATCAGAGTTAGAGGATAGAGTGCACATGGGAAATGCAGATGCTGAAACAAGGAATGGGAAACCATCAGCGGCAGTTGTACAAGAGTATTTGGTGGAGGCATATGAGACTCGAGTTGCAGAAACAGAGAAGAAAAAGCTAATGATTCCTATCCCCCTTGATGAAGAACTGAAATCTAAGATTTGTTCTCGTAAAAGACAGTGGGGAGCAAGTTGGTTTGAGCAATACTTCATATTATTTTCAAGAGGATTCAAAGAACGGAGGCATGACTATTTCAGCTGGTTGAGAATCACCCAAGTTATATCCACTGCAGTCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAATAACCCAAAAGGTCTGCAAGACCAGGCAGGACTGCTTTTCTTTATTGCCGTCTTTTGGGGATTCTTTCCTGTCTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGGCTAAGGAACGAGCAACAGATATGTACAGATTAAGTGCATACTTCGTGGCTAGAACTACAAGTGACATTCCACTAGACCTAGTATTACCAGTGCTTTTCCTCCTCGTTGTTTATTTCATGGCTGGCTTGAGACTGAGTGCAGGGCCTTTTTTCCTTAGTATTCTTACAGTTTTTCTCTGCATTGTGGCAGCTCAGGGACTTGGACTTGCTATTGGGGCTACACTAATGGACTTGAAAAAGGCAACAACTTTGGCTTCAGTGACTGTGATGACTTTCATGCTGGCTGGAGGTTTCTTTGTGAAGAAAGTCCCCATATTCATATCTTGGATTCGGTACCTATCTTTCAACTACCACACGTACAAACTTTTGCTGAAGGTGCAATATGAACACATTACACCTAGCATAAATGGGATCAAAATTGACAATGGTTCCACAGAGGTTGCTGCTCTGATAGTAATGGTTTTTGGTTACCGTTTATTGGCATATCTTTCTCTGCGGTGGATGAAACTTCAAGCTTGA 1746 0.4221 MTTTEEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGARVNHTTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLKLPNTLTKEQKEKRALDVIVELGLERCQETMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFQCIGCTPLIAMNPAEFLLDLANGNVNDISVPSELEDRVHMGNADAETRNGKPSAAVVQEYLVEAYETRVAETEKKKLMIPIPLDEELKSKICSRKRQWGASWFEQYFILFSRGFKERRHDYFSWLRITQVISTAVILGLLWWQSDANNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLAKERATDMYRLSAYFVARTTSDIPLDLVLPVLFLLVVYFMAGLRLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKKATTLASVTVMTFMLAGGFFVKKVPIFISWIRYLSFNYHTYKLLLKVQYEHITPSINGIKIDNGSTEVAALIVMVFGYRLLAYLSLRWMKLQA. 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05360 581 Pfam ABC-2 type transporter 328 537 IPR013525 GO:0016020|GO:0140359
Seca1g05360 581 Pfam ABC transporter 10 161 IPR003439 GO:0005524
Seca1g05360 581 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 233 IPR003439 GO:0005524
Seca1g05360 581 ProSitePatterns ABC transporters family signature. 133 147 IPR017871 GO:0005524|GO:0016887
Seca1g05360 581 Gene3D - 2 227 IPR027417 -
Seca1g05360 581 CDD ABCG_EPDR 2 215 - -
Seca1g05360 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 226 IPR027417 -
Seca1g05360 581 SMART AAA_5 19 210 IPR003593 GO:0016887
Seca1g05360 581 FunFam ABC transporter G family member 22 1 227 - -
Seca1g05360 581 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05360 Seca-Chr1 157374353 157381914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05360 9 247 Calmodulin-binding Proteins AT2G36910 28.112 2.32e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05360 K05681 - gmx:100798801 1028.08