Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05354 ATGGGAAACAATTGTGTTGGATCAATAGTCTCAAAAGATGGACTAATTCCTTCTGTTCTTCCAAGTTCATTTTGGTGGTCACAGCCAACTAGTGGAATAGTAATCACTGGTGCACCTTCACCTGTGAGTAAAAATCCCAACACAAATGTTCGACAAAATGCTCCAGAGATAGTGAAAATTGACAACAAGGAGATGAAGCCAATTCAATCCAATAAACAGGACAAAGAGGCTAATAAGAAGCCTTCAGAGGAACAAATAAGGCAAGGGGAAATGGAGCAGGCTAGAGTAGCACCAAAGATGCACCATAAGAAGAGGCTAGCAGTAGTAACTGCTGGACTTCAAGCTGAGTCTGTTTTGCTGAGAAAGAGTGGTCATTTTAAGGAGTACTATAATTTAGGACCTGAACTTGGGAAAGGACAATATGGAACTACTTCCCTTTGCTTGGAGAAAGCTACTGGGAAAAAGTATGCCTGCAAGTCCATTCCAAAGGTGAAATTGGTGAGAAATGATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCATTTGGCAGGTAGTCCAAATGTGATCTCAATTAAAGGGGCTTATGAGGATGCTGTTGCAGTTCATGTTGTCATGGAATTATGTTCAGGGGGTGAGTTGTTTGATAGGATTGTGGAAAGGGGCCATTACACCGAAAGAAAGGCAGCTAAACTTGCAAGGACTATAGTTAGTGTCATAGAGTCTTGCCATTCCCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTTGTTGATGGGCATGAAGACTCAACCCTTAAGGCAATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGACATTTTTAGTGACGTGGTAGGGAGTCCTTATTATATTGCACCTGAAGTTCTACGCAAGCGTTATGGACCAGAAGCTGATGTATGGAGTGCAGGTGTTATCATATACATTCTCTTATGTGGAATGCCTCCATTTTGGGGTGGTTTCTCCTTGTTCAAAAAATTGAGAATTGATTTTATTCCTTTGGTAATAGAATCGGAGCAAGAGATATTTGAGGAGGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCCAAATATCTCTGAAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTTAGAGATCCTAGAAAACGGTTAACAGCACATGAAGTTCTTTGCCACCCTTGGATTCAGGTTGATGGAGTTGCTCCGGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTTAAGCAGTTTTCAGCAATGAGCAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTACTGGATTGAAAGAAATGTTTAAGATGATAGACACAGACAACAGTGGTCAAATTACTTTTGAAAAACTCAAGAATGGGCTGAAAATGTTTGGTGCTAATCTCAGTGAATCTGAAATTTTCGATTTAATGCAAGCTGCAGATGTTGACAACAGTGGTGCAATTGACTATAGAGAATTCATAGCTGCCACATTGCATTTAAACAAAGTTGACAAGGAAGATTATTTACTTGCAGCTTTCTCATATTTTGATAAAGATGGAAGTGGCTACATCACTCAAGATGAGCTTCAACAAGCCTGTGAAGAATTTGGCATGGAGGATGTCCTCTTGGAGGAATTGATCCAAGAAGCTGATCAGAATCATGATGGCCGAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGAAATGCAGATTTAGGTAGGAGTGGTCTAAAGGGTAACACTAGTTTTAGCTTTGGATTTAGGGAGGCTCTATCAGTATGCTAA 1839 0.4029 MGNNCVGSIVSKDGLIPSVLPSSFWWSQPTSGIVITGAPSPVSKNPNTNVRQNAPEIVKIDNKEMKPIQSNKQDKEANKKPSEEQIRQGEMEQARVAPKMHHKKRLAVVTAGLQAESVLLRKSGHFKEYYNLGPELGKGQYGTTSLCLEKATGKKYACKSIPKVKLVRNDDVEDVRREIQIMHHLAGSPNVISIKGAYEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVSVIESCHSLGVMHRDLKPENFLFVDGHEDSTLKAIDFGMSVFFKPGDIFSDVVGSPYYIAPEVLRKRYGPEADVWSAGVIIYILLCGMPPFWGGFSLFKKLRIDFIPLVIESEQEIFEEVLHGDLDFSSDPWPNISESAKDLVRKMLVRDPRKRLTAHEVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMSKLKKMALRVIAENLSEEEITGLKEMFKMIDTDNSGQITFEKLKNGLKMFGANLSESEIFDLMQAADVDNSGAIDYREFIAATLHLNKVDKEDYLLAAFSYFDKDGSGYITQDELQQACEEFGMEDVLLEELIQEADQNHDGRIDYNEFVAMMQRGNADLGRSGLKGNTSFSFGFREALSVC. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05354 612 FunFam Calcium-dependent protein kinase 1 132 215 - -
Seca1g05354 612 Gene3D Transferase(Phosphotransferase) domain 1 216 410 - -
Seca1g05354 612 FunFam Calcium-dependent protein kinase 1 413 587 - -
Seca1g05354 612 ProSitePatterns EF-hand calcium-binding domain. 533 545 IPR018247 -
Seca1g05354 612 FunFam Calcium-dependent protein kinase SK5 216 417 - -
Seca1g05354 612 SUPERFAMILY EF-hand 434 585 IPR011992 -
Seca1g05354 612 Pfam EF-hand domain pair 465 515 IPR002048 GO:0005509
Seca1g05354 612 PANTHER SERINE/THREONINE-PROTEIN KINASE 119 579 - -
Seca1g05354 612 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Seca1g05354 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Seca1g05354 612 ProSiteProfiles Protein kinase domain profile. 130 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05354 612 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Seca1g05354 612 Gene3D - 412 588 - -
Seca1g05354 612 Gene3D Phosphorylase Kinase; domain 1 133 215 - -
Seca1g05354 612 SMART serkin_6 130 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05354 612 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Seca1g05354 612 ProSiteProfiles EF-hand calcium-binding domain profile. 559 589 IPR002048 GO:0005509
Seca1g05354 612 Pfam EF-hand domain pair 525 584 IPR002048 GO:0005509
Seca1g05354 612 SMART efh_1 524 552 IPR002048 GO:0005509
Seca1g05354 612 SMART efh_1 558 586 IPR002048 GO:0005509
Seca1g05354 612 SMART efh_1 488 516 IPR002048 GO:0005509
Seca1g05354 612 SMART efh_1 452 480 IPR002048 GO:0005509
Seca1g05354 612 CDD EFh 524 584 IPR002048 GO:0005509
Seca1g05354 612 ProSiteProfiles EF-hand calcium-binding domain profile. 520 555 IPR002048 GO:0005509
Seca1g05354 612 MobiDBLite consensus disorder prediction 62 88 - -
Seca1g05354 612 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
Seca1g05354 612 SUPERFAMILY Protein kinase-like (PK-like) 128 406 IPR011009 -
Seca1g05354 612 CDD STKc_CAMK 130 404 - -
Seca1g05354 612 Pfam Protein kinase domain 131 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05354 612 ProSitePatterns EF-hand calcium-binding domain. 567 579 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05354 Seca-Chr1 157310264 157314423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05354 1 606 EF-hand Containing Proteins AT5G04870 63.906 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca1g05354 Pkinase 8.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05354 K13412 - gmx:100793377 913.294